Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DTQ05_RS11190 Genome accession   NZ_CP030931
Coordinates   2137134..2138936 (-) Length   600 a.a.
NCBI ID   WP_050677569.1    Uniprot ID   -
Organism   Exiguobacterium acetylicum strain AMCC 101217     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2132134..2143936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTQ05_RS11165 - 2132987..2133874 (-) 888 WP_149427649.1 RluA family pseudouridine synthase -
  DTQ05_RS11170 - 2133893..2134696 (-) 804 WP_149427650.1 NAD kinase -
  DTQ05_RS11175 - 2134707..2135351 (-) 645 WP_035396676.1 GTP pyrophosphokinase family protein -
  DTQ05_RS11180 - 2135469..2136029 (+) 561 WP_149428148.1 CYTH domain-containing protein -
  DTQ05_RS11185 - 2136124..2136915 (+) 792 WP_050677567.1 DsbA family protein -
  DTQ05_RS11190 pepF 2137134..2138936 (-) 1803 WP_050677569.1 oligoendopeptidase F Regulator
  DTQ05_RS11195 - 2139001..2139951 (-) 951 WP_149427651.1 competence protein CoiA family protein -
  DTQ05_RS11200 cls 2139970..2141481 (-) 1512 WP_149427652.1 cardiolipin synthase -
  DTQ05_RS11205 - 2141550..2142272 (+) 723 WP_149427653.1 SDR family oxidoreductase -
  DTQ05_RS11210 mecA 2142335..2142961 (-) 627 WP_149427654.1 adaptor protein MecA -
  DTQ05_RS11215 spxA 2143133..2143531 (-) 399 WP_012370920.1 transcriptional regulator SpxA -
  DTQ05_RS16295 - 2143704..2143841 (-) 138 WP_023468890.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68360.70 Da        Isoelectric Point: 4.5583

>NTDB_id=302488 DTQ05_RS11190 WP_050677569.1 2137134..2138936(-) (pepF) [Exiguobacterium acetylicum strain AMCC 101217]
MAEVLTRQDVDVTETWNLESIYATNEAWEEEFESVKAMLPLLVEYKGRLGQSAETLYEGLQLRDEVSRRLYKLYTYAHMR
YDENTADSFYQAMNDRARTLASQIGATLAFMTPELLAVPESTIETYLNENPDLAMYRHAFDELNQEREHVLTEAEEAILA
KAGEVLGQSGTTFGMLNNADLTFPKIKGEDGEETELTHGRFITFLESSDRSVREAAFKAMYGTYAKYTNTLASTLAGSVK
KDNFYADVRKFPSARAAALHGNAIPESVYDGLVEAVHEHLPLLHRYVALRKRVLGLDELHVYDMYTPLVSEVEMKVSYEE
AKQLMVEGLAPLGAEYKHILEEGLSERWVDVRETRGKRSGAYSSGAYDTQPFILMNWQDNINNLFTLAHEFGHSVHSYYT
RKSQPYPYGDYSIFVAEVASTTNEALLNDYLLKKVTDRKEKLYLLNNQLETFRGTLFRQTMFAEFEHAIHDAARLGQSLT
PEFLTSTYYALNQKYFGEEIVLDEEIGLEWARIPHFYYNYYVYQYATGISAAAALTDQILEEGQPAVERYINNFLKAGSS
DYPIEVLKAAGVDMTTKAPVEAALRQFERVLDEFEALLAE

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=302488 DTQ05_RS11190 WP_050677569.1 2137134..2138936(-) (pepF) [Exiguobacterium acetylicum strain AMCC 101217]
ATGGCAGAAGTATTAACACGTCAAGATGTTGACGTTACAGAAACATGGAATCTAGAGTCGATTTACGCAACGAACGAAGC
GTGGGAAGAAGAATTCGAATCGGTGAAAGCAATGCTCCCATTACTCGTCGAGTATAAGGGTCGTCTTGGACAGAGTGCAG
AAACGCTCTATGAAGGGTTACAGTTACGCGACGAAGTCTCAAGACGTCTTTATAAGCTTTATACATACGCGCACATGCGT
TATGACGAAAATACAGCAGATAGTTTCTACCAAGCAATGAACGACCGTGCTCGAACACTCGCGTCGCAAATCGGAGCAAC
ACTTGCTTTCATGACACCAGAACTATTAGCTGTACCTGAGTCAACGATTGAGACGTATCTTAATGAGAATCCAGATCTTG
CGATGTATCGTCATGCATTTGATGAATTGAATCAAGAGCGTGAACACGTCCTGACGGAAGCGGAAGAAGCGATTCTTGCA
AAGGCAGGAGAAGTACTCGGTCAATCCGGTACGACGTTCGGTATGTTGAACAATGCAGATCTGACATTCCCGAAAATCAA
AGGGGAAGACGGAGAAGAAACAGAGTTGACACATGGTCGCTTCATCACATTCCTGGAATCATCTGATCGTTCGGTCCGTG
AAGCAGCATTTAAAGCGATGTATGGAACATATGCGAAATACACGAATACGCTCGCTTCGACACTTGCTGGGTCAGTTAAG
AAAGACAACTTCTATGCAGATGTCCGGAAGTTCCCATCGGCACGCGCAGCAGCTTTACACGGTAATGCGATTCCTGAGTC
CGTCTATGATGGATTAGTTGAAGCGGTACATGAGCATTTACCATTGCTCCATCGTTACGTCGCCCTACGTAAGCGAGTGC
TCGGACTCGATGAACTACACGTGTATGATATGTACACACCGCTCGTTTCTGAGGTGGAGATGAAAGTCTCTTACGAGGAA
GCGAAACAATTGATGGTCGAAGGGCTCGCACCGCTCGGAGCAGAGTACAAGCACATCCTCGAAGAAGGGTTGTCTGAACG
TTGGGTTGATGTCCGAGAGACGCGTGGTAAACGGAGTGGAGCCTACTCTTCTGGTGCTTATGATACACAGCCGTTCATTT
TGATGAACTGGCAAGACAACATCAACAACCTCTTTACACTCGCACATGAATTCGGACATTCTGTCCATAGTTATTACACG
CGGAAGTCTCAACCATATCCATACGGTGATTATTCAATCTTCGTCGCAGAAGTTGCCTCAACGACGAATGAAGCATTGTT
GAACGACTATCTATTGAAGAAAGTAACGGATCGTAAAGAAAAACTCTATCTATTAAACAATCAACTCGAAACATTCCGTG
GAACATTGTTCCGACAAACGATGTTCGCTGAATTCGAACATGCAATTCATGATGCGGCTCGTCTTGGACAATCGCTGACA
CCGGAATTCTTAACGTCAACGTATTATGCGTTGAATCAAAAATACTTCGGAGAAGAAATTGTATTGGATGAAGAAATCGG
TCTAGAATGGGCTCGGATTCCACACTTCTATTACAATTATTATGTCTATCAGTATGCAACGGGCATTTCTGCTGCTGCTG
CCTTGACGGATCAGATTCTAGAAGAAGGACAACCTGCTGTAGAGCGATACATCAACAATTTCTTAAAAGCGGGATCAAGT
GATTATCCAATCGAAGTATTAAAAGCTGCGGGTGTTGATATGACAACAAAAGCACCAGTTGAAGCAGCACTGCGTCAATT
TGAACGTGTCCTAGATGAATTTGAAGCTTTGTTAGCAGAGTGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-183)

Peptidase family M3 (Peptidase_M3)

(204-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.829

97.333

0.485

Multiple sequence alignment