Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ETT57_RS06275 Genome accession   NZ_CP035442
Coordinates   1200800..1202461 (-) Length   553 a.a.
NCBI ID   WP_136048673.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1195800..1207461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT57_RS06250 (ETT57_06240) - 1196855..1197130 (-) 276 WP_002983920.1 HU family DNA-binding protein -
  ETT57_RS06255 (ETT57_06245) - 1197229..1197816 (-) 588 WP_002989129.1 YpmS family protein -
  ETT57_RS06260 (ETT57_06250) - 1197794..1198636 (-) 843 WP_002992620.1 SGNH/GDSL hydrolase family protein -
  ETT57_RS06265 (ETT57_06255) - 1198629..1199468 (-) 840 WP_002989125.1 DegV family protein -
  ETT57_RS06270 (ETT57_06260) - 1199696..1200628 (-) 933 WP_136048674.1 LPXTG cell wall anchor domain-containing protein -
  ETT57_RS06275 (ETT57_06265) recN 1200800..1202461 (-) 1662 WP_136048673.1 DNA repair protein RecN Machinery gene
  ETT57_RS06280 (ETT57_06270) - 1202483..1202953 (-) 471 WP_002983907.1 arginine repressor -
  ETT57_RS06285 (ETT57_06275) - 1202940..1203767 (-) 828 WP_136095881.1 TlyA family RNA methyltransferase -
  ETT57_RS06290 (ETT57_06280) - 1203760..1204632 (-) 873 WP_011284950.1 polyprenyl synthetase family protein -
  ETT57_RS06295 (ETT57_06285) - 1204632..1204847 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  ETT57_RS06300 (ETT57_06290) xseA 1204825..1206165 (-) 1341 WP_136048672.1 exodeoxyribonuclease VII large subunit -
  ETT57_RS06305 (ETT57_06295) - 1206318..1207172 (-) 855 WP_010922486.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62311.52 Da        Isoelectric Point: 4.6120

>NTDB_id=302332 ETT57_RS06275 WP_136048673.1 1200800..1202461(-) (recN) [Streptococcus pyogenes strain emm25]
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESLGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGNV
NDVLDYYDNIIKEYQLLTGDDLSSGDLESELKALEKQLVAAATNLSERRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTPEERVEEIASMIAGTDMTQAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=302332 ETT57_RS06275 WP_136048673.1 1200800..1202461(-) (recN) [Streptococcus pyogenes strain emm25]
ATGTTATTAGAAATTTCTATTAAAAATTTTGCTATTATTGATGAAATTTCCCTAAATTTTGAAAATGGTATGACGGTTTT
GACGGGTGAAACTGGAGCAGGAAAGTCTATTATCATTGATGCTATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATTAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGAGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAGGAACACAAAGA
TCGTATTGATATGTTGGCCTTTCAGATAGCAGAAATTGAAGCTGCTGCTTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAGTACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATTATCAAAGAATACCAGCTATTAACAGGAGATGATTTGTCTTCAGGGGACCT
AGAATCAGAATTGAAAGCCTTAGAAAAACAATTGGTTGCTGCAGCCACTAACTTGAGTGAACGCCGCCATCAATTGGCAG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACCAATCCAGGCGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCGCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTTATTGCTATTGCTGATTATCAGTATTTTATTTCTAAAGA
AAGTAAAGAAGAGTCCACCGTTTCTAAGGTAAGGTTATTAACTCCTGAAGAACGTGTGGAAGAAATTGCTAGCATGATTG
CAGGAACAGATATGACACAAGCTGCTCTTACGCAGGCTCGTGAACTACTTGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.452

Multiple sequence alignment