Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DTO10_RS18740 Genome accession   NZ_CP030926
Coordinates   3876524..3878341 (+) Length   605 a.a.
NCBI ID   WP_116821705.1    Uniprot ID   -
Organism   Peribacillus butanolivorans strain PHB-7a     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3871524..3883341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTO10_RS18720 (DTO10_18715) spxA 3871846..3872241 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  DTO10_RS18725 (DTO10_18720) mecA 3872723..3873391 (+) 669 WP_053345000.1 adaptor protein MecA -
  DTO10_RS18730 (DTO10_18725) cls 3873510..3875021 (+) 1512 WP_116821703.1 cardiolipin synthase -
  DTO10_RS18735 (DTO10_18730) - 3875123..3876331 (+) 1209 WP_116821704.1 competence protein CoiA -
  DTO10_RS18740 (DTO10_18735) pepF 3876524..3878341 (+) 1818 WP_116821705.1 oligoendopeptidase F Regulator
  DTO10_RS18750 (DTO10_18745) - 3879365..3880258 (-) 894 WP_098174859.1 ClpXP adapter SpxH family protein -
  DTO10_RS18755 (DTO10_18750) - 3880255..3880659 (-) 405 WP_053345004.1 globin -
  DTO10_RS18760 (DTO10_18755) - 3880894..3881553 (-) 660 WP_409339768.1 lytic transglycosylase domain-containing protein -
  DTO10_RS18765 (DTO10_18760) - 3881578..3882156 (-) 579 WP_116821706.1 CYTH domain-containing protein -
  DTO10_RS18770 (DTO10_18765) - 3882483..3883103 (+) 621 WP_053345007.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69777.20 Da        Isoelectric Point: 4.7357

>NTDB_id=302329 DTO10_RS18740 WP_116821705.1 3876524..3878341(+) (pepF) [Peribacillus butanolivorans strain PHB-7a]
MTQETKVNTLPSRSEIAAEDTWRLEDIFATEEDWEAAFKAVKEDLKKADAHKGTLGESAENLFRALQFQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDESKVAGFLEEKEELNLYKHSLEEISLQRPHILSAE
QEALLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYIRFLESEDRRVREDAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARHAALSNNNIPETVYDNLVKTVNDNLPLLHRYLELRKKVLELDELHMYDLFTPLVKEVKM
EVTYEEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSFYTRKYQPYPYGNYSIFVAEVASTCNENLLNDYLLNTIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYELNKKYFGENVAIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLAK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=302329 DTO10_RS18740 WP_116821705.1 3876524..3878341(+) (pepF) [Peribacillus butanolivorans strain PHB-7a]
ATGACACAAGAAACAAAAGTAAATACATTGCCCTCAAGAAGTGAAATTGCAGCTGAAGATACTTGGAGGTTGGAAGATAT
CTTCGCGACTGAAGAAGACTGGGAAGCTGCCTTCAAAGCTGTAAAAGAAGACCTTAAGAAAGCGGATGCGCACAAAGGAA
CATTAGGTGAAAGCGCTGAAAATTTATTTAGAGCCCTGCAATTCCAAGATGAAGTATTTGAGAAGCTAGGGAAAGTATAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCTTTTTATCAAGGAATGGAAGACCGTGCAAAAGCTTTATA
CGCCCAGGCAGCAGCGGCATTTTCTTATATGGTTCCTGAACTATTGAGTATTGACGAAAGCAAAGTGGCTGGATTTTTAG
AAGAAAAAGAAGAATTGAATTTATATAAACATTCATTGGAGGAAATTAGTCTTCAGAGGCCTCATATCTTGTCTGCTGAG
CAGGAAGCTTTATTGGCACAAGCATCAGAAGTACTCGATGCATCAGGTAATACTTTCGGCATGCTTAACAATGCAGATTT
GAAATTCCCGACCATCAAGGATGAAGAGGGGAATGAAGTGGAAATAACTCACGGAAGGTACATTCGTTTCCTTGAAAGTG
AAGATCGTCGTGTACGTGAGGATGCATTTAAAGGGGTATATAGTAAGTATGGAGAGTTTCGCAATACATTTGCTTCAACC
CTGTCAGGTGAAGTGAAGAATCATAATTTCAATGCGACAGTTCGAAAATATGATTCGGCACGCCATGCGGCTTTAAGTAA
CAATAACATTCCGGAGACCGTATACGATAATCTCGTTAAAACGGTCAATGACAATTTGCCGTTACTGCACCGTTATCTTG
AATTACGTAAAAAAGTATTAGAATTAGATGAACTTCATATGTATGATTTATTCACTCCGCTTGTAAAAGAAGTGAAAATG
GAAGTGACATATGAGGAAGCGAAAGATTATGTCCTTAAAGGCCTTGCTCCACTTGGGGAAGACTATTTAAATGTTTTAAA
AGAAGGATTTGAAAATCGTTGGGTTGATGTGCATGAGAACAAAGGGAAACGAAGCGGTGCCTATTCCTCTGGTACATACG
GGACGAATCCTTATATTTTAATGAACTGGCAGAATAACGTGAATAACTTATTCACTCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTTTTATACACGTAAATATCAGCCATACCCATACGGAAATTACTCTATTTTTGTAGCAGAAGTTGCATCGAC
ATGTAACGAAAATCTATTGAATGATTATTTATTAAATACAATCGAGGATGAAAAGAAACGCATTTATTTATTAAATCATT
ATTTAGAAGGCTTCCGTGGTACGCTGTTCCGCCAAACGATGTTTGCTGAGTTTGAACATACAATTCATTTGAAAGCTCAA
AATGGAGAGGCATTAACAGCAGATATGCTGACGAAGGAATATTATGAACTAAACAAGAAATACTTTGGAGAGAATGTAGC
CATTGATGAGGAAATCGGTCTGGAATGGGCTCGAATTCCACATTTCTACTATAATTACTACGTTTATCAATATGCGACTG
GTATCAGTGCAGCTACAGCCTTAAGCAAGCAAATTCTAGAAGAAGGAGAACCAGCTGTCAAAAGGTATTTGGAGTTCTTA
AAATCAGGAAGCTCCGATTATCCTATTGAAGTTCTCAAAAAGGCTGGTGTCGATATGACAAAAGCAGAGCCAGTGCAAGA
AGCAATGAATGTATTTGAAGAAAAATTAAATGAGTTGGAAGAACTTTTGGCTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.842

98.182

0.499

Multiple sequence alignment