Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ETT57_RS04910 Genome accession   NZ_CP035442
Coordinates   927230..928300 (-) Length   356 a.a.
NCBI ID   WP_136048361.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 922230..933300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT57_RS04890 (ETT57_04880) citX 922809..923387 (+) 579 WP_136048364.1 citrate lyase holo-[acyl-carrier protein] synthase -
  ETT57_RS04895 (ETT57_04885) - 923402..924796 (+) 1395 WP_168389383.1 oxaloacetate decarboxylase subunit alpha -
  ETT57_RS04900 (ETT57_04890) citC 924907..925959 (-) 1053 WP_136048362.1 [citrate (pro-3S)-lyase] ligase -
  ETT57_RS04905 (ETT57_04895) - 926048..926530 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  ETT57_RS04910 (ETT57_04900) xerS 927230..928300 (-) 1071 WP_136048361.1 tyrosine recombinase XerS Machinery gene
  ETT57_RS04915 (ETT57_04905) - 928770..929468 (+) 699 WP_002993300.1 S24 family peptidase -
  ETT57_RS04920 (ETT57_04910) ffh 929603..931165 (-) 1563 WP_136048360.1 signal recognition particle protein -
  ETT57_RS04925 (ETT57_04915) - 931180..931512 (-) 333 WP_217493895.1 putative DNA-binding protein -
  ETT57_RS04930 (ETT57_04920) - 931610..932308 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41497.65 Da        Isoelectric Point: 9.5552

>NTDB_id=302319 ETT57_RS04910 WP_136048361.1 927230..928300(-) (xerS) [Streptococcus pyogenes strain emm25]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDL
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=302319 ETT57_RS04910 WP_136048361.1 927230..928300(-) (xerS) [Streptococcus pyogenes strain emm25]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCCTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTTA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803