Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DTO10_RS09760 Genome accession   NZ_CP030926
Coordinates   2022079..2023029 (-) Length   316 a.a.
NCBI ID   WP_053348872.1    Uniprot ID   A0AAX0S172
Organism   Peribacillus butanolivorans strain PHB-7a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2017079..2028029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTO10_RS27005 - 2018667..2018834 (-) 168 WP_162878705.1 hypothetical protein -
  DTO10_RS09745 (DTO10_09745) - 2019218..2020162 (-) 945 WP_176527555.1 siderophore ABC transporter substrate-binding protein -
  DTO10_RS09750 (DTO10_09750) - 2020387..2021145 (-) 759 WP_098177264.1 ABC transporter ATP-binding protein -
  DTO10_RS09755 (DTO10_09755) - 2021139..2022086 (-) 948 WP_053348652.1 iron chelate uptake ABC transporter family permease subunit -
  DTO10_RS09760 (DTO10_09760) ceuB 2022079..2023029 (-) 951 WP_053348872.1 ABC transporter permease Machinery gene
  DTO10_RS09765 (DTO10_09765) - 2023238..2023684 (+) 447 WP_116821148.1 DUF1450 domain-containing protein -
  DTO10_RS09770 (DTO10_09770) - 2024142..2025797 (+) 1656 WP_244923534.1 M14 family metallocarboxypeptidase -
  DTO10_RS09775 (DTO10_09775) shc 2025979..2027877 (+) 1899 WP_244923535.1 squalene--hopene cyclase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34918.20 Da        Isoelectric Point: 9.5025

>NTDB_id=302302 DTO10_RS09760 WP_053348872.1 2022079..2023029(-) (ceuB) [Peribacillus butanolivorans strain PHB-7a]
MKIRYLVMALIVLSFTSLFIGVKDITPLDLLDLSDDKVQIMLQSRFPRMVTIVIAGVVMSISGLIMQQLSRNKFVSPTTA
GTMDSARLGLLLAIIIFPSAALIEKMAFAFIFALAGTFLFMKILDQVKYKDTIFIPLVGLMFGNIVGSISTFFAYKYDLI
QSLNTWMNGDFSMIMSGRYELIYISIPLVILAYFFANKFTVAGMGEEFAINLGLNYKFVVNFGLVIVALSSTVVLLTVGT
IPFIGLIVPNIVSLYLGDNLKKSLSHTALLGAVFLLICDILGRIIIYPFEIPIGLVVGVIGSAVFIYLIMRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=302302 DTO10_RS09760 WP_053348872.1 2022079..2023029(-) (ceuB) [Peribacillus butanolivorans strain PHB-7a]
ATGAAGATAAGATATTTAGTCATGGCGTTAATTGTTTTATCATTTACCTCATTATTCATTGGAGTAAAAGATATTACGCC
ACTCGATTTATTAGATTTAAGTGATGATAAAGTGCAAATTATGCTGCAAAGCCGTTTTCCTAGAATGGTAACTATTGTAA
TTGCTGGGGTGGTTATGAGTATCAGTGGCTTAATCATGCAGCAATTGAGTAGAAATAAATTTGTATCACCAACAACTGCC
GGTACGATGGATTCTGCAAGGTTGGGTCTTCTTCTTGCTATTATCATTTTTCCATCAGCAGCACTTATTGAGAAAATGGC
ATTCGCATTCATATTCGCTTTGGCAGGCACTTTCTTGTTCATGAAAATTCTTGATCAAGTTAAATACAAGGATACGATTT
TTATTCCATTGGTTGGTTTGATGTTTGGTAATATCGTCGGATCTATATCAACTTTCTTTGCTTATAAATATGATTTGATT
CAAAGTCTCAACACATGGATGAATGGGGATTTCTCGATGATTATGTCGGGAAGATATGAACTAATATACATAAGTATCCC
TTTGGTTATTCTCGCATACTTCTTTGCTAATAAATTCACTGTGGCAGGGATGGGTGAGGAGTTTGCTATCAATCTTGGAC
TCAATTATAAATTTGTAGTCAATTTTGGATTGGTTATCGTAGCATTATCCTCTACCGTCGTCTTGTTAACGGTGGGAACA
ATTCCTTTTATAGGACTGATTGTACCTAATATTGTTTCACTTTACCTTGGTGATAATTTGAAGAAGAGTCTTTCTCATAC
AGCATTGCTAGGGGCTGTGTTCCTATTGATCTGCGATATTCTGGGTCGGATTATCATTTATCCATTTGAAATTCCGATAG
GTCTCGTAGTTGGTGTAATAGGAAGCGCCGTATTTATCTATCTGATAATGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.684

100

0.497

Multiple sequence alignment