Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DTO10_RS02965 Genome accession   NZ_CP030926
Coordinates   626163..627878 (-) Length   571 a.a.
NCBI ID   WP_116820704.1    Uniprot ID   -
Organism   Peribacillus butanolivorans strain PHB-7a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 621163..632878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTO10_RS02950 (DTO10_02950) - 621579..623156 (-) 1578 WP_098176765.1 DUF342 domain-containing protein -
  DTO10_RS02955 (DTO10_02955) spo0A 623566..624357 (-) 792 WP_116820703.1 sporulation transcription factor Spo0A -
  DTO10_RS02960 (DTO10_02960) spoIVB 624708..626000 (-) 1293 WP_053346903.1 SpoIVB peptidase -
  DTO10_RS02965 (DTO10_02965) recN 626163..627878 (-) 1716 WP_116820704.1 DNA repair protein RecN Machinery gene
  DTO10_RS02970 (DTO10_02970) ahrC 627901..628350 (-) 450 WP_098176763.1 transcriptional regulator AhrC/ArgR -
  DTO10_RS02975 (DTO10_02975) - 628711..629538 (-) 828 WP_053346906.1 TlyA family RNA methyltransferase -
  DTO10_RS02980 (DTO10_02980) dxs 629543..631435 (-) 1893 WP_098176761.1 1-deoxy-D-xylulose-5-phosphate synthase -
  DTO10_RS02985 (DTO10_02985) - 631687..632580 (-) 894 WP_098176760.1 polyprenyl synthetase family protein -
  DTO10_RS02990 (DTO10_02990) - 632582..632815 (-) 234 WP_053346909.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64356.25 Da        Isoelectric Point: 5.1478

>NTDB_id=302285 DTO10_RS02965 WP_116820704.1 626163..627878(-) (recN) [Peribacillus butanolivorans strain PHB-7a]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIDDDKHPVFAK
AEEFGLDMNDGMAILRRDISLSGKSVCRVNGKLVTIAILREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKVASAL
AEYQKLFKRYETASKQLNSLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKNSSETVSNSYFLLEEAVSTIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRN
IEEIMEYGAGIEEEVEKLQNRETHIAKLEKEIKSIKADLIVEAKNLSELRQTFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIESEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=302285 DTO10_RS02965 WP_116820704.1 626163..627878(-) (recN) [Peribacillus butanolivorans strain PHB-7a]
TTGTTAACAGAACTTTCGATTAGGAATTTTGCGATCATTGACAGCTTGTCTGTTTCATTTGAAAAAGGCCTGACTGTATT
GACCGGCGAAACAGGGGCAGGGAAATCCATTATCATAGATGCCGTTCATTTATTGGTTGGTGGCCGTGGTTCGGCAGAGT
TTATTCGACATGGTGAGTCGAAGGCCGAAATAGAAGGGCTCTTTCAAATTGATGATGACAAACATCCGGTCTTTGCCAAG
GCTGAAGAATTTGGCTTGGATATGAATGATGGGATGGCTATCCTTCGAAGAGATATCTCACTTAGCGGCAAGAGCGTCTG
CCGGGTAAATGGAAAGCTCGTAACGATTGCAATTTTACGTGAGATAGGACGGACTTTGATAGATATACATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCACCTTCCTTTGCTTGACCAGTTCGGCGGTGAAAAAGTTGCTTCAGCTCTT
GCCGAATACCAAAAGTTATTTAAACGGTATGAAACAGCTTCTAAACAACTGAATAGTTTAAGTCAAAATGAACAGCAAAT
GGTTCATCGTCTCGATTTAATCCAGTTTCAATTCGATGAAATTCAGAAAGCGGATTTGAAACTACGCGAAGATGAAGAAT
TGATGGAAGAACGGAAAAAAATTAATAATTTCGAAAAAATTCATGAAGCGCTGCAAACCAGCTATAATGCTTTAAATGGA
GAGCAACATGCAATTGATTGGCTATCCGTGGCCATGAATAACCTAGAAGAAGCAGCGGGTCTCGATGAGGGTTTAAAAAA
TAGCTCGGAAACTGTTTCAAATAGCTACTTCCTTCTCGAAGAAGCGGTCTCGACCATCCGAGATCAGTTAGATTCTTTGG
ATTATGATACAGAACGAGTCGAATTTATTGAAAGTCGCCTTAATGAAATAAATCAATTAAAACGTAAATACGGACGGAAC
ATCGAGGAAATAATGGAGTATGGTGCTGGGATTGAGGAAGAAGTCGAAAAGCTTCAAAATCGGGAAACCCATATAGCGAA
GCTTGAAAAAGAAATAAAATCGATTAAAGCTGATTTAATTGTTGAAGCAAAAAACCTGTCTGAACTTCGGCAAACATTCG
CACAGCAGTTAACAAAGAAAATACATCAGGAATTAAAAGATTTATACATGGAAAAAACAATTTTCGAACCGCATTTTCTT
CAAACAGCTTATACTTTCGATGAGTTATCAGACAGGGGAATTAATCAGTCGGGTCTGGATTCCATGGAGTTTTATATATC
CACCAATCCAGGAGAGCCGTTAAAACCTCTTTCGAAAATTGCTTCTGGCGGAGAGTTATCTAGGATTATGTTGGCTTTGA
AAAGTATTTTCTCCAAACATCAAGGCATTACTTCCATTATATTCGATGAGGTGGACACAGGTGTAAGCGGCAGGGTTGCA
CAATCTATTGCCGAAAAAATCTATAAAGTGGCAACGGGTTCCCAGGTACTTTGTATTTCACATTTACCACAGGTCGCGGC
AATGGCAGATACCCATTTATTTATTGCAAAAAATGTTAGAGCAGGACGAACCAATACTTCGGTGAAGCCTCTTATAGAAA
GTGAAAAAATAAAAGAAATTGGCAGGATGATCTCCGGTGTCGAGATTACGGATTTAACGAAGCAACATGCCAATGAATTA
ATTCAGCTAGCCAAAAGGTTGAAAATTACGTCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.59

100

0.611

Multiple sequence alignment