Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ETT57_RS00260 Genome accession   NZ_CP035442
Coordinates   33522..34277 (+) Length   251 a.a.
NCBI ID   WP_136048815.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28522..39277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT57_RS09680 (ETT57_00245) - 29907..30188 (-) 282 WP_111689438.1 transposase -
  ETT57_RS00250 (ETT57_00250) pcsB 30925..32121 (+) 1197 WP_011017226.1 peptidoglycan hydrolase PcsB -
  ETT57_RS00255 (ETT57_00255) - 32374..33336 (+) 963 WP_002986722.1 ribose-phosphate diphosphokinase -
  ETT57_RS00260 (ETT57_00260) recO 33522..34277 (+) 756 WP_136048815.1 DNA repair protein RecO Machinery gene
  ETT57_RS00265 (ETT57_00265) plsX 34380..35387 (+) 1008 WP_014407186.1 phosphate acyltransferase PlsX -
  ETT57_RS00270 (ETT57_00270) - 35380..35622 (+) 243 WP_014407187.1 phosphopantetheine-binding protein -
  ETT57_RS00275 (ETT57_00275) purC 35773..36477 (+) 705 WP_017649245.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29543.05 Da        Isoelectric Point: 6.9077

>NTDB_id=302275 ETT57_RS00260 WP_136048815.1 33522..34277(+) (recO) [Streptococcus pyogenes strain emm25]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDLHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=302275 ETT57_RS00260 WP_136048815.1 33522..34277(+) (recO) [Streptococcus pyogenes strain emm25]
ATGCAACTAACAGAATCACTAGGCATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTTGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGCACTGATTTA
CCGCTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCGAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACGTTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602