Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECDH10B_RS05280 Genome accession   NC_010473
Coordinates   1074289..1074918 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli str. K-12 substr. DH10B     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1069289..1079918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECDH10B_RS05255 (ECDH10B_1025) ycbZ 1069690..1071450 (-) 1761 WP_000156518.1 Lon protease family protein -
  ECDH10B_RS05260 (ECDH10B_1026) matP 1071636..1072088 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECDH10B_RS05265 (ECDH10B_1027) ompA 1072164..1073204 (-) 1041 WP_000750416.1 porin OmpA -
  ECDH10B_RS05275 (ECDH10B_1028) sulA 1073561..1074070 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECDH10B_RS05280 (ECDH10B_1029) sxy/tfoX 1074289..1074918 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECDH10B_RS05285 (ECDH10B_1030) yccS 1074881..1077043 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ECDH10B_RS05290 (ECDH10B_1031) yccF 1077053..1077499 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ECDH10B_RS05295 (ECDH10B_1032) helD 1077622..1079676 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=30220 ECDH10B_RS05280 WP_000839153.1 1074289..1074918(+) (sxy/tfoX) [Escherichia coli str. K-12 substr. DH10B]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=30220 ECDH10B_RS05280 WP_000839153.1 1074289..1074918(+) (sxy/tfoX) [Escherichia coli str. K-12 substr. DH10B]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment