Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   Y31_RS14435 Genome accession   NZ_CP030910
Coordinates   3007784..3008419 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain Y31     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3002784..3013419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y31_RS14420 (Y31_2760) - 3003489..3004733 (+) 1245 WP_057385993.1 lipoprotein-releasing ABC transporter permease subunit -
  Y31_RS14425 (Y31_2761) - 3004821..3005354 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  Y31_RS14430 (Y31_2762) comA 3005485..3007710 (+) 2226 WP_058168903.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Y31_RS14435 (Y31_2763) exbB 3007784..3008419 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  Y31_RS14440 (Y31_2764) - 3008416..3008856 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  Y31_RS14445 (Y31_2765) lpxK 3008856..3009854 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  Y31_RS14450 (Y31_2766) - 3009892..3010077 (+) 186 WP_003091157.1 Trm112 family protein -
  Y31_RS14455 (Y31_2767) kdsB 3010077..3010841 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Y31_RS14460 (Y31_2768) - 3010841..3011305 (+) 465 WP_115759493.1 low molecular weight protein-tyrosine-phosphatase -
  Y31_RS14465 (Y31_2769) murB 3011302..3012321 (+) 1020 WP_115759495.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=302116 Y31_RS14435 WP_003091163.1 3007784..3008419(+) (exbB) [Pseudomonas aeruginosa strain Y31]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=302116 Y31_RS14435 WP_003091163.1 3007784..3008419(+) (exbB) [Pseudomonas aeruginosa strain Y31]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment