Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | DS746_RS06195 | Genome accession | NZ_CP030888 |
| Coordinates | 1177392..1178342 (+) | Length | 316 a.a. |
| NCBI ID | WP_052775522.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain CS19 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1159712..1188457 | 1177392..1178342 | within | 0 |
Gene organization within MGE regions
Location: 1159712..1188457
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DS746_RS06105 (DS746_1198) | pglI | 1159712..1160641 (-) | 930 | WP_002866141.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| DS746_RS06110 (DS746_1199) | pglH | 1160634..1161713 (-) | 1080 | WP_079264296.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| DS746_RS06115 (DS746_1200) | pglK | 1161710..1163404 (-) | 1695 | WP_002921645.1 | ABC-type lipopolysaccharide transporter PglK | - |
| DS746_RS06120 (DS746_1201) | galE | 1163398..1164384 (-) | 987 | WP_002921651.1 | UDP-glucose 4-epimerase GalE | - |
| DS746_RS06125 (DS746_1202) | - | 1164443..1165237 (-) | 795 | WP_002921656.1 | 3'-5' exonuclease | - |
| DS746_RS06130 (DS746_1203) | waaC | 1165304..1166332 (+) | 1029 | WP_002852873.1 | lipopolysaccharide heptosyltransferase I | - |
| DS746_RS06135 (DS746_1204) | htrB | 1166322..1167208 (+) | 887 | Protein_1189 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| DS746_RS06140 (DS746_1205) | - | 1167205..1168753 (+) | 1549 | Protein_1190 | glycosyltransferase family 2 protein | - |
| DS746_RS06145 (DS746_1207) | - | 1168757..1169926 (+) | 1170 | WP_052775523.1 | glycosyltransferase family 2 protein | - |
| DS746_RS06150 (DS746_1208) | - | 1169996..1171039 (+) | 1044 | WP_259831421.1 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| DS746_RS06155 (DS746_1209) | - | 1171025..1171930 (-) | 906 | WP_002924067.1 | glycosyltransferase family 2 protein | - |
| DS746_RS06160 (DS746_1210) | - | 1172019..1172894 (+) | 876 | WP_002878823.1 | alpha-2,3-sialyltransferase | - |
| DS746_RS06165 (DS746_1211) | neuB | 1172895..1173935 (+) | 1041 | WP_002922930.1 | N-acetylneuraminate synthase | - |
| DS746_RS06170 (DS746_1212) | neuC | 1173932..1175050 (+) | 1119 | WP_002922931.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| DS746_RS06175 (DS746_1213) | - | 1175047..1175712 (+) | 666 | WP_002922934.1 | cytidylyltransferase domain-containing protein | - |
| DS746_RS06180 (DS746_1214) | - | 1175700..1175873 (+) | 174 | WP_002896733.1 | hypothetical protein | - |
| DS746_RS09440 (DS746_1215) | - | 1175915..1176529 (+) | 615 | WP_269468790.1 | CatB-related O-acetyltransferase | - |
| DS746_RS06190 (DS746_1216) | - | 1176521..1177333 (-) | 813 | WP_002922943.1 | glycosyltransferase family 2 protein | - |
| DS746_RS06195 (DS746_1217) | waaF | 1177392..1178342 (+) | 951 | WP_052775522.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| DS746_RS06200 (DS746_1218) | - | 1178328..1179101 (-) | 774 | WP_220518797.1 | glycosyltransferase family 25 protein | - |
| DS746_RS06205 (DS746_1219) | gmhA | 1179101..1179661 (-) | 561 | WP_002922730.1 | D-sedoheptulose 7-phosphate isomerase | - |
| DS746_RS06210 (DS746_1220) | rfaE1 | 1179658..1181043 (-) | 1386 | WP_259831434.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| DS746_RS06215 (DS746_1221) | rfaD | 1181036..1181989 (-) | 954 | WP_002922734.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| DS746_RS06220 (DS746_1222) | gmhB | 1181990..1182550 (-) | 561 | WP_002878815.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| DS746_RS06225 (DS746_1223) | - | 1182632..1182934 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| DS746_RS06230 (DS746_1224) | ccoS | 1182957..1183163 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| DS746_RS06235 (DS746_1225) | - | 1183160..1185517 (-) | 2358 | WP_079264324.1 | heavy metal translocating P-type ATPase | - |
| DS746_RS06240 (DS746_1226) | rho | 1185626..1186924 (+) | 1299 | WP_002922739.1 | transcription termination factor Rho | - |
| DS746_RS06245 (DS746_1227) | dnaX | 1186928..1188457 (+) | 1530 | WP_002866174.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36293.94 Da Isoelectric Point: 10.3523
>NTDB_id=302086 DS746_RS06195 WP_052775522.1 1177392..1178342(+) (waaF) [Campylobacter jejuni strain CS19]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQTRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQTRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI
Nucleotide
Download Length: 951 bp
>NTDB_id=302086 DS746_RS06195 WP_052775522.1 1177392..1178342(+) (waaF) [Campylobacter jejuni strain CS19]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACATTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGCATGAAAGATTTAAAGCCTGAAGTGATTTTAAAAGCAATTCAAAATTTAATTAATATCTAA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACATTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGCATGAAAGATTTAAAGCCTGAAGTGATTTTAAAAGCAATTCAAAATTTAATTAATATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
93.949 |
99.367 |
0.934 |