Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DSL98_RS11310 Genome accession   NZ_CP030881
Coordinates   2310070..2311449 (-) Length   459 a.a.
NCBI ID   WP_063493323.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain nF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2305070..2316449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSL98_RS11295 cysS 2305373..2306785 (-) 1413 WP_024971787.1 cysteine--tRNA ligase -
  DSL98_RS11300 gltX 2307063..2308553 (-) 1491 WP_003640932.1 glutamate--tRNA ligase -
  DSL98_RS11305 - 2308879..2310054 (-) 1176 WP_114071741.1 PIN/TRAM domain-containing protein -
  DSL98_RS11310 radA 2310070..2311449 (-) 1380 WP_063493323.1 DNA repair protein RadA Machinery gene
  DSL98_RS11325 - 2312328..2312864 (-) 537 WP_003640928.1 dUTP diphosphatase -
  DSL98_RS11330 - 2313003..2313299 (+) 297 WP_003640927.1 GNAT family N-acetyltransferase -
  DSL98_RS11335 rpiA 2313308..2313991 (+) 684 WP_003640926.1 ribose-5-phosphate isomerase RpiA -
  DSL98_RS11340 - 2314067..2315398 (+) 1332 WP_003643927.1 aminopeptidase C -
  DSL98_RS11345 - 2315588..2316280 (-) 693 WP_003640924.1 matrixin family metalloprotease -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50049.35 Da        Isoelectric Point: 7.7217

>NTDB_id=302064 DSL98_RS11310 WP_063493323.1 2310070..2311449(-) (radA) [Lactiplantibacillus plantarum strain nF1]
MAKAKTQFVCSNCGYSTPRYLGRCPNCSEWNTLTEEHFDTKPDRKSRVSFAGKSAKPQRLKEVSLTKTPRVKTKLKEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLAETGGSVLYVTGEESASQVKMRADRLAVSSEDFYLYPETDMSNIRST
IESTHPEFVVIDSVQTMQEPDMDSAIGSVSQIREITAELLQIAKTNGITIFIVGHVTKGGAIAGPKILEHMVDTVLYFEG
DLHHTYRILRAVKNRFGSTNELGIFEMRTGGLYEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALVTPTVFGN
AKRTASGLDHNRVSLIMAVLEKRASLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSVASSYRDQQTRPSDCFVGEVGLTGE
IRRVNRIESRVGEAAKLGFKRIFIPKNNLQGWDIPTGIEVIGVATLKEALQLALQQPNY

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=302064 DSL98_RS11310 WP_063493323.1 2310070..2311449(-) (radA) [Lactiplantibacillus plantarum strain nF1]
GTGGCAAAAGCAAAAACTCAGTTTGTTTGTTCTAACTGTGGTTATTCAACACCGCGATATTTAGGACGGTGTCCGAACTG
TTCTGAATGGAATACACTAACTGAAGAACATTTTGATACAAAACCGGACCGCAAGTCGCGGGTGAGCTTTGCGGGTAAGT
CGGCTAAGCCACAACGACTCAAAGAAGTGTCGCTGACTAAGACACCGCGTGTCAAGACTAAGCTGAAAGAGTTCAACCGG
GTCTTAGGTGGCGGTGTTGTGCCAGGTTCACTAGTTTTGATCGGTGGTGATCCAGGTATTGGTAAGTCAACGTTACTACT
GCAAGTTTCGGGGCAATTGGCCGAGACGGGTGGTTCTGTACTATACGTGACTGGTGAAGAAAGTGCCTCCCAAGTGAAGA
TGCGGGCGGACCGGCTGGCTGTTAGCAGTGAAGACTTTTATCTTTATCCTGAGACTGATATGTCGAATATTCGTTCAACG
ATTGAATCGACGCATCCAGAATTTGTGGTCATTGATTCGGTACAAACGATGCAAGAACCTGATATGGACTCTGCGATTGG
TTCAGTATCACAAATCCGTGAAATTACGGCTGAACTACTGCAAATTGCGAAGACTAACGGCATTACCATTTTTATTGTGG
GCCATGTGACTAAGGGTGGTGCCATTGCGGGGCCTAAGATCTTAGAACATATGGTTGATACCGTTTTGTACTTTGAAGGT
GATTTACATCATACGTACCGCATTTTACGGGCAGTCAAGAATCGATTCGGGTCAACGAATGAACTGGGAATATTTGAGAT
GCGGACGGGCGGTTTGTATGAAGTGGCCAATCCGTCAGAGATCTTCTTGGAAGAACGTCTGAAGGATGCTACGGGTTCCG
CCATCGTTGTTTCAATGGAAGGCACACGACCAATCTTAGTAGAAGTTCAAGCGCTGGTAACGCCAACGGTCTTTGGTAAT
GCGAAGCGGACCGCAAGTGGCTTGGATCATAATCGAGTCTCCTTGATTATGGCAGTGTTGGAAAAACGGGCGAGTCTAAT
GCTTCAGAACCAGGACGCGTATTTGAAAGCGGCCGGTGGCGTTAAGTTAGATGAACCGGCGATTGACTTAGCTATTGCGG
TCAGTGTGGCTTCTAGTTATCGTGACCAGCAGACTCGTCCGAGTGACTGTTTTGTTGGTGAAGTCGGTTTGACTGGTGAG
ATTCGGCGGGTCAACCGGATTGAATCACGAGTTGGTGAGGCGGCTAAGCTAGGTTTTAAACGTATCTTTATTCCTAAGAA
TAATCTGCAAGGTTGGGATATCCCAACTGGAATCGAAGTAATTGGAGTTGCCACGCTAAAAGAAGCGCTCCAATTAGCAT
TACAACAACCAAATTATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(59-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

67.627

98.257

0.664
  radA Streptococcus pneumoniae D39

67.627

98.257

0.664
  radA Streptococcus pneumoniae R6

67.627

98.257

0.664
  radA Streptococcus pneumoniae TIGR4

67.627

98.257

0.664
  radA Streptococcus mitis NCTC 12261

67.627

98.257

0.664
  radA Streptococcus mitis SK321

67.627

98.257

0.664
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

99.346

0.649

Multiple sequence alignment