Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   DS737_RS14675 Genome accession   NZ_CP030880
Coordinates   3171703..3172029 (-) Length   108 a.a.
NCBI ID   WP_113997836.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2A     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3166703..3177029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS737_RS14655 - 3167010..3167618 (-) 609 WP_026070334.1 FHA domain-containing protein -
  DS737_RS14660 gspD 3167697..3169907 (-) 2211 WP_113997834.1 type II secretion system secretin GspD -
  DS737_RS14665 - 3169949..3170785 (-) 837 WP_113997835.1 type II secretion system protein N -
  DS737_RS14670 gspN 3170785..3171528 (-) 744 WP_026056326.1 type II secretion system protein N -
  DS737_RS14675 hns 3171703..3172029 (-) 327 WP_113997836.1 H-NS family nucleoid-associated regulatory protein Regulator
  DS737_RS14680 - 3172461..3172892 (-) 432 WP_005083921.1 thioesterase family protein -
  DS737_RS14685 - 3172901..3174094 (-) 1194 WP_113997837.1 heme biosynthesis protein HemY -
  DS737_RS14690 - 3174100..3174927 (-) 828 WP_017395054.1 hypothetical protein -
  DS737_RS14695 - 3174924..3175700 (-) 777 WP_004637621.1 uroporphyrinogen-III synthase -
  DS737_RS14700 hemC 3175700..3176617 (-) 918 WP_004637620.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12265.96 Da        Isoelectric Point: 5.0269

>NTDB_id=302033 DS737_RS14675 WP_113997836.1 3171703..3172029(-) (hns) [Acinetobacter haemolyticus strain HW-2A]
MKPDISDLSVEDLKRLQAEAEALIESKKDQAIEDAYNQIIAIADGIGLTVEELLAVGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=302033 DS737_RS14675 WP_113997836.1 3171703..3172029(-) (hns) [Acinetobacter haemolyticus strain HW-2A]
ATGAAACCAGATATTAGTGATTTATCAGTTGAAGATTTAAAGCGTTTGCAAGCAGAAGCTGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAATTGAAGATGCATATAATCAAATCATAGCAATTGCTGATGGTATTGGTTTAACTGTTGAAGAGTTAT
TGGCTGTAGGTGAGCAAAAGCGTAAAAAGACTACGCGTAAAGCTGTAGAACCACGCTACCGCAATAAAAATAATACTGAA
GAAACTTGGACTGGTCGTGGTAAACAACCGCGTTGGTTGGTTGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

84.259

100

0.843

Multiple sequence alignment