Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ETT60_RS05105 Genome accession   NZ_CP035439
Coordinates   963592..964662 (-) Length   356 a.a.
NCBI ID   WP_129284016.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 958592..969662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT60_RS05085 (ETT60_05075) citX 959172..959750 (+) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -
  ETT60_RS05090 (ETT60_05080) - 959765..961159 (+) 1395 WP_023612467.1 oxaloacetate decarboxylase subunit alpha -
  ETT60_RS05095 (ETT60_05085) citC 961269..962321 (-) 1053 WP_129284018.1 [citrate (pro-3S)-lyase] ligase -
  ETT60_RS05100 (ETT60_05090) - 962410..962892 (-) 483 WP_129284017.1 PASTA domain-containing protein -
  ETT60_RS05105 (ETT60_05095) xerS 963592..964662 (-) 1071 WP_129284016.1 tyrosine recombinase XerS Machinery gene
  ETT60_RS05110 (ETT60_05100) - 965136..965834 (+) 699 WP_002993300.1 S24 family peptidase -
  ETT60_RS05115 (ETT60_05105) ffh 965951..967513 (-) 1563 WP_111717948.1 signal recognition particle protein -
  ETT60_RS05120 (ETT60_05110) - 967528..967860 (-) 333 WP_002989745.1 putative DNA-binding protein -
  ETT60_RS05125 (ETT60_05115) - 967958..968656 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41443.51 Da        Isoelectric Point: 9.5552

>NTDB_id=302033 ETT60_RS05105 WP_129284016.1 963592..964662(-) (xerS) [Streptococcus pyogenes strain emm77]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGAPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=302033 ETT60_RS05105 WP_129284016.1 963592..964662(-) (xerS) [Streptococcus pyogenes strain emm77]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTACTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCAGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATCTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGCTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803

Multiple sequence alignment