Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DSD31_RS16620 Genome accession   NZ_CP030874
Coordinates   3487506..3488129 (-) Length   207 a.a.
NCBI ID   WP_004860161.1    Uniprot ID   A0AAP1QFX2
Organism   Raoultella sp. X13     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3482506..3493129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSD31_RS16605 (DSD31_16605) helD 3482742..3484796 (-) 2055 WP_032717632.1 DNA helicase IV -
  DSD31_RS16610 (DSD31_16610) - 3484919..3485365 (+) 447 WP_004860167.1 YccF domain-containing protein -
  DSD31_RS16615 (DSD31_16615) yccS 3485383..3487518 (+) 2136 WP_004860163.1 YccS family putative transporter -
  DSD31_RS16620 (DSD31_16620) sxy/tfoX 3487506..3488129 (-) 624 WP_004860161.1 TfoX/Sxy family DNA transformation protein Regulator
  DSD31_RS16625 (DSD31_16625) sulA 3488591..3489100 (+) 510 WP_004860159.1 SOS-induced cell division inhibitor SulA -
  DSD31_RS16630 (DSD31_16630) ompA 3489453..3490523 (+) 1071 WP_004860157.1 porin OmpA -
  DSD31_RS16635 (DSD31_16635) matP 3490632..3491084 (-) 453 WP_004860155.1 macrodomain Ter protein MatP -
  DSD31_RS16640 (DSD31_16640) - 3491270..3493027 (+) 1758 WP_004860153.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23307.87 Da        Isoelectric Point: 9.5421

>NTDB_id=301991 DSD31_RS16620 WP_004860161.1 3487506..3488129(-) (sxy/tfoX) [Raoultella sp. X13]
MKKISSLRFHQLQECLSPLGKISCRPLFGGYSLAIDDTVFAMVAEGEIYLKICEQSAEYRVVHATPLLTMRKNGRPVLLK
YYQVDETLWGDSKTLFNLSASSLQSARNEKHRQRASGRLKDLPNISFHMELLLINAGVSDENMLRQFGAEKVWLKLRESN
KALTLNVLYALEGAIAGVHSAALPTQRRQELKVWADSQHKSIDAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=301991 DSD31_RS16620 WP_004860161.1 3487506..3488129(-) (sxy/tfoX) [Raoultella sp. X13]
ATGAAGAAAATTTCATCTTTACGGTTCCATCAACTCCAGGAATGTTTATCTCCACTCGGCAAAATAAGCTGTCGCCCGCT
CTTTGGGGGCTATAGCCTTGCCATAGACGATACCGTTTTTGCCATGGTTGCCGAGGGCGAAATCTATCTTAAAATTTGTG
AGCAGAGCGCGGAATATCGCGTTGTGCATGCTACCCCTCTTTTGACGATGCGGAAAAATGGTCGCCCGGTATTACTGAAA
TATTATCAGGTTGACGAGACTCTCTGGGGGGATAGCAAAACGCTTTTCAATCTATCGGCGTCCTCATTACAAAGTGCACG
TAATGAAAAGCACCGACAGCGCGCGTCCGGAAGATTAAAAGATCTCCCGAACATCAGTTTTCACATGGAGCTGCTGTTGA
TTAACGCGGGCGTGAGCGATGAAAACATGCTTCGTCAGTTTGGTGCAGAGAAAGTCTGGCTGAAATTGCGCGAGTCAAAT
AAAGCCCTCACCCTGAATGTTCTCTATGCGCTGGAAGGCGCGATTGCCGGCGTGCATTCCGCAGCGCTCCCGACGCAGCG
GCGTCAGGAGCTTAAGGTTTGGGCCGACAGCCAGCACAAGAGTATCGATGCTTACTCGGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.792

95.169

0.502

Multiple sequence alignment