Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   DSQ35_RS07500 Genome accession   NZ_CP030866
Coordinates   1448802..1449410 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain CS17     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1430554..1448146 1448802..1449410 flank 656


Gene organization within MGE regions


Location: 1430554..1449410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSQ35_RS07370 (DSQ35_1461) - 1431900..1433138 (+) 1239 WP_052803393.1 phage minor head protein -
  DSQ35_RS07375 (DSQ35_1462) - 1433264..1433638 (+) 375 WP_002876309.1 phage tail protein -
  DSQ35_RS07380 (DSQ35_1463) - 1433631..1433822 (+) 192 WP_002784520.1 tail protein X -
  DSQ35_RS07385 (DSQ35_1464) - 1433816..1434793 (+) 978 WP_116480900.1 phage late control D family protein -
  DSQ35_RS07390 (DSQ35_1465) - 1434790..1435074 (-) 285 WP_002784523.1 Mor transcription activator family protein -
  DSQ35_RS07395 (DSQ35_1466) - 1435168..1435839 (+) 672 WP_002876312.1 endonuclease -
  DSQ35_RS07400 (DSQ35_1467) - 1435831..1436106 (-) 276 WP_002873721.1 hypothetical protein -
  DSQ35_RS07405 (DSQ35_1468) - 1436153..1436602 (-) 450 WP_260383882.1 regulatory protein GemA -
  DSQ35_RS07410 (DSQ35_1469) - 1436599..1437291 (-) 693 WP_052774290.1 hypothetical protein -
  DSQ35_RS07415 (DSQ35_1470) - 1437291..1437560 (-) 270 WP_002784531.1 hypothetical protein -
  DSQ35_RS07420 (DSQ35_1471) - 1437557..1438519 (-) 963 WP_253697187.1 AAA family ATPase -
  DSQ35_RS07425 (DSQ35_1472) - 1438628..1439053 (-) 426 WP_052774289.1 YopX family protein -
  DSQ35_RS07430 (DSQ35_1473) - 1439050..1439322 (-) 273 WP_002791414.1 hypothetical protein -
  DSQ35_RS07435 (DSQ35_1475) - 1439386..1439571 (-) 186 WP_002824160.1 hypothetical protein -
  DSQ35_RS07440 (DSQ35_1476) - 1439568..1440053 (-) 486 WP_253697183.1 host-nuclease inhibitor Gam family protein -
  DSQ35_RS07445 (DSQ35_1477) - 1440160..1440501 (-) 342 WP_002824158.1 DUF4406 domain-containing protein -
  DSQ35_RS07450 (DSQ35_1478) - 1440558..1440743 (-) 186 WP_002824157.1 hypothetical protein -
  DSQ35_RS07455 (DSQ35_1479) - 1440740..1440931 (-) 192 WP_052774287.1 sigma factor-like helix-turn-helix DNA-binding protein -
  DSQ35_RS07460 (DSQ35_1480) - 1440934..1441857 (-) 924 WP_002806833.1 AAA family ATPase -
  DSQ35_RS07465 (DSQ35_1481) - 1441928..1444003 (-) 2076 WP_032593272.1 DDE-type integrase/transposase/recombinase -
  DSQ35_RS07470 (DSQ35_1482) - 1444000..1444200 (-) 201 WP_002826948.1 hypothetical protein -
  DSQ35_RS07475 (DSQ35_1484) - 1444350..1445024 (+) 675 WP_253697180.1 S24 family peptidase -
  DSQ35_RS07480 (DSQ35_1485) - 1445024..1445725 (+) 702 WP_002826961.1 hypothetical protein -
  DSQ35_RS07485 (DSQ35_1486) - 1445802..1446665 (-) 864 Protein_1460 type II secretion system F family protein -
  DSQ35_RS07490 (DSQ35_1487) ctsE 1446662..1448221 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  DSQ35_RS07495 (DSQ35_1488) ctsX 1448211..1448798 (-) 588 WP_002851370.1 membrane protein Machinery gene
  DSQ35_RS07500 (DSQ35_1489) ctsP 1448802..1449410 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=301970 DSQ35_RS07500 WP_002851464.1 1448802..1449410(-) (ctsP) [Campylobacter jejuni strain CS17]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=301970 DSQ35_RS07500 WP_002851464.1 1448802..1449410(-) (ctsP) [Campylobacter jejuni strain CS17]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment