Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DSQ35_RS06610 Genome accession   NZ_CP030866
Coordinates   1283669..1284637 (+) Length   322 a.a.
NCBI ID   WP_050460271.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CS17     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1278669..1289637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSQ35_RS06585 (DSQ35_1301) cdsA 1279579..1280304 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  DSQ35_RS06590 (DSQ35_1302) - 1280313..1280651 (-) 339 WP_002852397.1 hypothetical protein -
  DSQ35_RS06595 (DSQ35_1303) - 1280653..1281960 (-) 1308 WP_032582356.1 NFACT family protein -
  DSQ35_RS06600 (DSQ35_1304) mobA 1282022..1282597 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  DSQ35_RS06605 (DSQ35_1305) pldA 1282594..1283583 (+) 990 WP_002864239.1 phospholipase A -
  DSQ35_RS06610 (DSQ35_1306) ceuB 1283669..1284637 (+) 969 WP_050460271.1 ABC transporter permease Machinery gene
  DSQ35_RS06615 (DSQ35_1307) ceuC 1284630..1285568 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  DSQ35_RS06620 (DSQ35_1308) ceuD 1285565..1286320 (+) 756 WP_002884173.1 ABC transporter ATP-binding protein -
  DSQ35_RS06625 (DSQ35_1309) ceuB 1286333..1287325 (+) 993 WP_032582354.1 enterochelin ABC transporter substrate-binding protein CeuB -
  DSQ35_RS06635 (DSQ35_1310) - 1287551..1288105 (-) 555 WP_032582353.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35483.49 Da        Isoelectric Point: 9.6678

>NTDB_id=301964 DSQ35_RS06610 WP_050460271.1 1283669..1284637(+) (ceuB) [Campylobacter jejuni strain CS17]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFIQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYMALCGALFLLVCDIIARLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=301964 DSQ35_RS06610 WP_050460271.1 1283669..1284637(+) (ceuB) [Campylobacter jejuni strain CS17]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATCCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCATC
TTTTTTCATTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATGGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTGCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.137

100

0.981

Multiple sequence alignment