Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | DSQ35_RS05615 | Genome accession | NZ_CP030866 |
| Coordinates | 1080525..1081484 (+) | Length | 319 a.a. |
| NCBI ID | WP_002875425.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain CS17 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1060820..1093705 | 1080525..1081484 | within | 0 |
Gene organization within MGE regions
Location: 1060820..1093705
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSQ35_RS05525 (DSQ35_1087) | pglI | 1060820..1061749 (-) | 930 | WP_002890470.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| DSQ35_RS05530 (DSQ35_1088) | pglH | 1061742..1062821 (-) | 1080 | WP_002859237.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| DSQ35_RS05535 (DSQ35_1089) | pglK | 1062818..1064512 (-) | 1695 | WP_002890469.1 | ABC-type lipopolysaccharide transporter PglK | - |
| DSQ35_RS05540 (DSQ35_1090) | galE | 1064506..1065492 (-) | 987 | WP_032583022.1 | UDP-glucose 4-epimerase GalE | - |
| DSQ35_RS05545 (DSQ35_1091) | - | 1065551..1066345 (-) | 795 | WP_032583024.1 | 3'-5' exonuclease | - |
| DSQ35_RS05550 (DSQ35_1092) | waaC | 1066412..1067440 (+) | 1029 | WP_032583027.1 | lipopolysaccharide heptosyltransferase I | - |
| DSQ35_RS05555 (DSQ35_1093) | htrB | 1067430..1068317 (+) | 888 | WP_002890465.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| DSQ35_RS05560 (DSQ35_1094) | - | 1068314..1069861 (+) | 1548 | WP_002858148.1 | glycosyltransferase | - |
| DSQ35_RS05565 (DSQ35_1095) | - | 1069865..1071037 (+) | 1173 | WP_260383855.1 | glycosyltransferase family 2 protein | - |
| DSQ35_RS05570 (DSQ35_1096) | - | 1071021..1072016 (-) | 996 | WP_002858358.1 | capsular polysaccharide synthesis protein | - |
| DSQ35_RS05575 (DSQ35_1097) | - | 1072074..1073243 (+) | 1170 | WP_002858320.1 | glycosyltransferase family 2 protein | - |
| DSQ35_RS05580 (DSQ35_1098) | wlaN | 1073232..1074143 (-) | 912 | WP_002858039.1 | beta-1,3 galactosyltransferase | - |
| DSQ35_RS05585 (DSQ35_1099) | cstIII | 1074198..1075082 (+) | 885 | WP_002858290.1 | alpha-2,3-sialyltransferase | - |
| DSQ35_RS05590 (DSQ35_1100) | neuB1 | 1075063..1076094 (+) | 1032 | WP_002858213.1 | sialic acid synthase | - |
| DSQ35_RS05595 (DSQ35_1101) | neuC | 1076091..1077206 (+) | 1116 | WP_002858400.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| DSQ35_RS09075 | - | 1077203..1078141 (+) | 939 | Protein_1086 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| DSQ35_RS09080 | - | 1078151..1078813 (+) | 663 | WP_002881429.1 | cytidylyltransferase domain-containing protein | - |
| DSQ35_RS05605 | - | 1078808..1079658 (-) | 851 | Protein_1088 | glycosyltransferase | - |
| DSQ35_RS05610 | waaV | 1079642..1080466 (-) | 825 | WP_002858096.1 | glycosyltransferase family 2 protein | - |
| DSQ35_RS05615 (DSQ35_1105) | waaF | 1080525..1081484 (+) | 960 | WP_002875425.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| DSQ35_RS05620 (DSQ35_1106) | gmhA | 1081465..1082025 (-) | 561 | WP_002858021.1 | D-sedoheptulose 7-phosphate isomerase | - |
| DSQ35_RS05625 (DSQ35_1107) | rfaE1 | 1082022..1083407 (-) | 1386 | WP_002890180.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| DSQ35_RS05630 (DSQ35_1108) | rfaD | 1083400..1084353 (-) | 954 | WP_002852832.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| DSQ35_RS05635 (DSQ35_1109) | gmhB | 1084354..1084915 (-) | 562 | Protein_1094 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| DSQ35_RS05640 (DSQ35_1110) | - | 1084996..1085298 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| DSQ35_RS05645 (DSQ35_1111) | ccoS | 1085321..1085527 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| DSQ35_RS05650 (DSQ35_1112) | - | 1085524..1087881 (-) | 2358 | WP_260383856.1 | heavy metal translocating P-type ATPase | - |
| DSQ35_RS05655 (DSQ35_1113) | rho | 1087990..1089288 (+) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| DSQ35_RS05660 (DSQ35_1114) | dnaX | 1089292..1090821 (+) | 1530 | WP_260383857.1 | DNA polymerase III subunit gamma/tau | - |
| DSQ35_RS05665 (DSQ35_1115) | - | 1090818..1091147 (-) | 330 | WP_074471058.1 | DUF2165 family protein | - |
| DSQ35_RS05670 (DSQ35_1116) | - | 1091161..1091340 (-) | 180 | WP_074471059.1 | DUF2165 family protein | - |
| DSQ35_RS05675 (DSQ35_1117) | copA | 1091412..1093511 (-) | 2100 | WP_002935180.1 | copper-translocating P-type ATPase CopA | - |
| DSQ35_RS05680 (DSQ35_1118) | - | 1093511..1093705 (-) | 195 | WP_002852760.1 | heavy-metal-associated domain-containing protein | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36734.30 Da Isoelectric Point: 10.2412
>NTDB_id=301959 DSQ35_RS05615 WP_002875425.1 1080525..1081484(+) (waaF) [Campylobacter jejuni strain CS17]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL
Nucleotide
Download Length: 960 bp
>NTDB_id=301959 DSQ35_RS05615 WP_002875425.1 1080525..1081484(+) (waaF) [Campylobacter jejuni strain CS17]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
100 |
100 |
1 |