Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | DSQ35_RS05270 | Genome accession | NZ_CP030866 |
| Coordinates | 1010349..1010672 (+) | Length | 107 a.a. |
| NCBI ID | WP_260383854.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain CS17 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1005349..1015672
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSQ35_RS05245 (DSQ35_1031) | rpsR | 1005712..1005972 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| DSQ35_RS05250 (DSQ35_1032) | lon | 1006032..1008407 (-) | 2376 | WP_002853487.1 | endopeptidase La | - |
| DSQ35_RS05255 (DSQ35_1033) | - | 1008424..1009071 (-) | 648 | WP_002852961.1 | outer membrane protein assembly factor BamD | - |
| DSQ35_RS05260 (DSQ35_1034) | fliW | 1009232..1009621 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| DSQ35_RS05265 (DSQ35_1035) | proC | 1009621..1010352 (+) | 732 | WP_002864259.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| DSQ35_RS05270 (DSQ35_1036) | ctsT | 1010349..1010672 (+) | 324 | WP_260383854.1 | hypothetical protein | Machinery gene |
| DSQ35_RS05275 (DSQ35_1037) | - | 1010647..1011309 (+) | 663 | WP_002858296.1 | hypothetical protein | - |
| DSQ35_RS05280 (DSQ35_1038) | - | 1011306..1011758 (+) | 453 | WP_002859148.1 | hypothetical protein | - |
| DSQ35_RS05285 (DSQ35_1039) | hemD | 1011755..1012384 (-) | 630 | WP_002878794.1 | uroporphyrinogen-III synthase | - |
| DSQ35_RS05290 (DSQ35_1040) | thiE | 1012362..1012994 (-) | 633 | WP_002852670.1 | thiamine phosphate synthase | - |
| DSQ35_RS05295 (DSQ35_1041) | thiD | 1012984..1013796 (-) | 813 | WP_002890078.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| DSQ35_RS05300 (DSQ35_1042) | - | 1013793..1014479 (-) | 687 | WP_002852847.1 | endonuclease III domain-containing protein | - |
| DSQ35_RS05305 (DSQ35_1043) | - | 1014476..1015237 (-) | 762 | WP_002852748.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 107 a.a. Molecular weight: 12919.30 Da Isoelectric Point: 9.1047
>NTDB_id=301957 DSQ35_RS05270 WP_260383854.1 1010349..1010672(+) (ctsT) [Campylobacter jejuni strain CS17]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQNYTFKIKIIAFILKNEQSFYTF
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQNYTFKIKIIAFILKNEQSFYTF
Nucleotide
Download Length: 324 bp
>NTDB_id=301957 DSQ35_RS05270 WP_260383854.1 1010349..1010672(+) (ctsT) [Campylobacter jejuni strain CS17]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGAGCAAAGCTTTTACACTTT
TTGA
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGAGCAAAGCTTTTACACTTT
TTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
94.444 |
84.112 |
0.794 |