Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   DSQ35_RS03320 Genome accession   NZ_CP030866
Coordinates   636622..637059 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain CS17     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 631622..642059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSQ35_RS03285 - 632241..633144 (+) 904 Protein_638 sensor histidine kinase KdpD -
  DSQ35_RS03290 - 633284..633472 (+) 189 WP_230099897.1 DUF4118 domain-containing protein -
  DSQ35_RS03295 - 633501..633632 (+) 132 WP_230099906.1 hypothetical protein -
  DSQ35_RS03300 - 633608..633934 (+) 327 WP_224328091.1 hypothetical protein -
  DSQ35_RS03305 (DSQ35_0653) uvrB 634036..636009 (-) 1974 WP_002869815.1 excinuclease ABC subunit UvrB -
  DSQ35_RS03310 (DSQ35_0654) - 636163..636393 (+) 231 WP_002852327.1 hypothetical protein -
  DSQ35_RS03315 (DSQ35_0655) - 636383..636625 (+) 243 WP_002854947.1 hypothetical protein -
  DSQ35_RS03320 (DSQ35_0656) Cj0683 636622..637059 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DSQ35_RS03325 (DSQ35_0657) priA 637041..638894 (+) 1854 WP_260383929.1 primosomal protein N' -
  DSQ35_RS03330 (DSQ35_0658) cipA 638904..640298 (-) 1395 WP_260383930.1 DUF2972 domain-containing protein -
  DSQ35_RS03335 (DSQ35_0659) ispG 640444..641517 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=301954 DSQ35_RS03320 WP_002852324.1 636622..637059(+) (Cj0683) [Campylobacter jejuni strain CS17]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=301954 DSQ35_RS03320 WP_002852324.1 636622..637059(+) (Cj0683) [Campylobacter jejuni strain CS17]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment