Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DR864_RS06630 Genome accession   NZ_CP030850
Coordinates   1560957..1562324 (+) Length   455 a.a.
NCBI ID   WP_114066213.1    Uniprot ID   A0A344TFK7
Organism   Runella rosea strain HYN0085     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1555957..1567324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR864_RS06600 (DR864_06600) - 1556639..1557442 (+) 804 WP_205319213.1 hypothetical protein -
  DR864_RS06605 (DR864_06605) - 1557622..1558203 (+) 582 WP_114066210.1 Crp/Fnr family transcriptional regulator -
  DR864_RS06610 (DR864_06610) - 1558200..1558916 (+) 717 WP_114066211.1 hypothetical protein -
  DR864_RS06615 (DR864_06615) - 1559000..1559347 (+) 348 WP_229599534.1 YciI family protein -
  DR864_RS06620 (DR864_06620) - 1559379..1559921 (+) 543 WP_205319215.1 SRPBCC family protein -
  DR864_RS06625 (DR864_06625) - 1560082..1560741 (-) 660 WP_114066212.1 ABC transporter ATP-binding protein -
  DR864_RS06630 (DR864_06630) radA 1560957..1562324 (+) 1368 WP_114066213.1 DNA repair protein RadA Machinery gene
  DR864_RS06635 (DR864_06635) - 1562328..1563761 (-) 1434 WP_114066214.1 arabinose isomerase -
  DR864_RS06640 (DR864_06640) - 1563949..1564827 (+) 879 WP_114066215.1 AraC family transcriptional regulator -
  DR864_RS06645 (DR864_06645) - 1564834..1565529 (-) 696 WP_114066216.1 response regulator transcription factor -
  DR864_RS06650 (DR864_06650) - 1565712..1566959 (-) 1248 WP_114066217.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50019.61 Da        Isoelectric Point: 6.1032

>NTDB_id=301885 DR864_RS06630 WP_114066213.1 1560957..1562324(+) (radA) [Runella rosea strain HYN0085]
MAKVKTAYFCQSCGHQSPKWLGRCPSCGEWNTLVEEVLEKEDKKGPIGQWKSVSLASKPKAIVEIKYEEEPRIVTIDGEL
NRVLGGGIVLGSLVLIGGEPGIGKSTLMLQIALTLTQRVLYVSGEESEQQIKMRAERLTSKNHNCFILTETSTDNIFRQI
EEFEPDVLIIDSIQTMQSSLIESGAGSVSQVRQCASELMKYAKESGVPVFMIGHITKDGSLAGPKTLEHMVDTVLQFEGD
RHTTYRILRTTKNRFGSTSELGIYEMLGTGLRQVTNPSEILISQREEQLSGITIGSMLEGNRPLMIEIQSLVSVANYGTP
QRSSTGFDNKRLQMLLAVLEKRGGFRLGTQDVFLNVAGGLRVEDPAIDLAVVTSIASSFEDSFVPPSVCFAGEVGLGGEV
RAVSRIEGRIAEAEKLGFKKIFISKYNTKGLIFKSYDIKIIPVAKLDEVFGELLR

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=301885 DR864_RS06630 WP_114066213.1 1560957..1562324(+) (radA) [Runella rosea strain HYN0085]
ATGGCTAAAGTCAAAACCGCTTATTTTTGTCAAAGTTGTGGTCATCAGTCACCCAAATGGCTGGGACGCTGCCCTTCCTG
CGGCGAATGGAACACCTTGGTAGAAGAAGTTCTCGAAAAAGAAGATAAAAAAGGGCCCATCGGACAATGGAAATCGGTGA
GTTTGGCCTCTAAACCCAAAGCCATTGTCGAAATAAAATACGAAGAAGAACCGCGTATTGTCACGATAGACGGCGAACTG
AACCGCGTTTTGGGCGGCGGTATTGTGTTGGGATCGTTGGTGCTCATCGGCGGTGAGCCGGGCATCGGAAAATCGACGCT
GATGCTGCAAATTGCGCTTACACTCACCCAACGCGTCCTGTACGTGTCGGGCGAAGAAAGTGAACAGCAAATCAAGATGC
GCGCCGAGCGGCTTACGTCCAAAAATCACAATTGCTTTATTCTGACGGAAACGTCGACCGATAATATTTTCCGTCAAATC
GAAGAATTTGAGCCAGATGTTCTCATCATTGACTCTATCCAAACCATGCAATCGTCGCTCATCGAATCGGGCGCGGGTAG
CGTGTCGCAGGTGCGTCAATGCGCTTCCGAACTGATGAAATACGCCAAAGAAAGCGGTGTGCCGGTGTTTATGATTGGGC
ACATCACCAAAGACGGCAGCTTGGCAGGCCCCAAAACCCTCGAACACATGGTGGATACGGTACTTCAGTTTGAAGGCGAC
CGCCACACCACCTACCGGATTTTGCGCACAACCAAAAACCGTTTTGGAAGCACCTCAGAATTAGGGATTTACGAAATGCT
CGGCACGGGACTTCGGCAAGTGACCAATCCGTCGGAAATTTTGATTTCACAGCGCGAAGAGCAATTGAGCGGCATCACCA
TTGGCTCCATGCTCGAAGGCAACCGACCGCTCATGATTGAAATACAGTCGCTGGTGAGTGTGGCCAACTACGGTACGCCG
CAGCGCAGTAGTACGGGATTTGACAACAAACGCCTTCAGATGCTGTTGGCGGTGTTGGAAAAACGCGGCGGTTTTCGTCT
GGGTACCCAAGACGTATTTCTCAACGTAGCGGGAGGCTTACGCGTAGAAGACCCCGCCATTGATTTGGCCGTGGTAACCT
CCATAGCATCGTCTTTTGAAGATTCTTTTGTACCACCTTCGGTTTGTTTTGCGGGAGAAGTGGGCTTGGGCGGTGAGGTC
CGGGCCGTGAGCCGCATCGAAGGCCGCATTGCCGAAGCAGAAAAATTGGGCTTTAAGAAAATCTTTATTTCCAAATACAA
CACCAAAGGACTGATTTTCAAGAGCTACGACATTAAGATTATCCCCGTCGCGAAGTTGGATGAAGTGTTTGGGGAATTAT
TACGGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A344TFK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.642

99.56

0.534
  radA Streptococcus mitis SK321

49.891

100

0.503
  radA Streptococcus mitis NCTC 12261

49.891

100

0.503
  radA Streptococcus pneumoniae TIGR4

49.673

100

0.501
  radA Streptococcus pneumoniae D39

49.673

100

0.501
  radA Streptococcus pneumoniae Rx1

49.673

100

0.501
  radA Streptococcus pneumoniae R6

49.673

100

0.501

Multiple sequence alignment