Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECOLC_RS14175 Genome accession   NC_010468
Coordinates   2888593..2889222 (-) Length   209 a.a.
NCBI ID   WP_000839134.1    Uniprot ID   -
Organism   Escherichia coli ATCC 8739     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2883593..2894222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECOLC_RS14160 (EcolC_2634) helD 2883835..2885889 (-) 2055 WP_012304887.1 DNA helicase IV -
  ECOLC_RS14165 (EcolC_2635) yccF 2886012..2886458 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ECOLC_RS14170 (EcolC_2636) yccS 2886468..2888630 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ECOLC_RS14175 (EcolC_2637) sxy/tfoX 2888593..2889222 (-) 630 WP_000839134.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECOLC_RS14180 (EcolC_2638) sulA 2889441..2889950 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECOLC_RS14190 (EcolC_2639) ompA 2890307..2891347 (+) 1041 WP_000750416.1 porin OmpA -
  ECOLC_RS14195 (EcolC_2640) matP 2891423..2891875 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECOLC_RS14200 (EcolC_2641) ycbZ 2892061..2893821 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.98 Da        Isoelectric Point: 9.2180

>NTDB_id=30188 ECOLC_RS14175 WP_000839134.1 2888593..2889222(-) (sxy/tfoX) [Escherichia coli ATCC 8739]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAIVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=30188 ECOLC_RS14175 WP_000839134.1 2888593..2889222(-) (sxy/tfoX) [Escherichia coli ATCC 8739]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATTGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment