Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DRB87_RS10050 Genome accession   NZ_CP030849
Coordinates   2192265..2193638 (+) Length   457 a.a.
NCBI ID   WP_017234104.1    Uniprot ID   A0A5E4VEA7
Organism   Pandoraea sp. XY-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2187265..2198638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRB87_RS10025 (DRB87_10045) - 2187494..2188486 (+) 993 WP_130025790.1 DUF1853 family protein -
  DRB87_RS10030 (DRB87_10050) - 2188468..2188656 (+) 189 WP_130025791.1 hypothetical protein -
  DRB87_RS10035 (DRB87_10055) thiD 2188718..2189542 (-) 825 WP_130025792.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DRB87_RS10040 (DRB87_10060) lplT 2189544..2190835 (-) 1292 Protein_2017 lysophospholipid transporter LplT -
  DRB87_RS10045 (DRB87_10065) alr 2191172..2192241 (+) 1070 Protein_2018 alanine racemase -
  DRB87_RS10050 (DRB87_10070) radA 2192265..2193638 (+) 1374 WP_017234104.1 DNA repair protein RadA Machinery gene
  DRB87_RS10055 (DRB87_10075) - 2193884..2195824 (-) 1941 WP_130025793.1 ATP-binding cassette domain-containing protein -
  DRB87_RS10060 (DRB87_10080) cls 2195997..2197424 (-) 1428 WP_130025794.1 cardiolipin synthase -
  DRB87_RS10065 (DRB87_10085) prmB 2197536..2198429 (-) 894 WP_130025795.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48134.32 Da        Isoelectric Point: 7.2690

>NTDB_id=301878 DRB87_RS10050 WP_017234104.1 2192265..2193638(+) (radA) [Pandoraea sp. XY-2]
MAKAKTVYICTECGGQTPKWAGQCPHCNGWNSLVESVAEAPTGHRYQSLAKSTPVRKLAQIEAADVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYVSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTVYSEALSSAPGSVAQVRECAAQLTRSAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKISEPAADLAVLLAIHSSLRNKPLPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEHAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=301878 DRB87_RS10050 WP_017234104.1 2192265..2193638(+) (radA) [Pandoraea sp. XY-2]
ATGGCCAAAGCCAAGACTGTCTATATTTGTACCGAATGCGGCGGGCAGACGCCCAAGTGGGCTGGGCAGTGCCCCCACTG
CAACGGCTGGAATTCGCTCGTCGAATCGGTGGCGGAAGCGCCGACAGGTCATCGATACCAATCGCTCGCCAAGAGTACGC
CGGTGCGCAAGCTCGCGCAGATCGAGGCGGCCGATGTGCCGCGCTTCTCCAGCGGCGTGAGTGAATTCGACCGCGTGCTG
GGCGGCGGTCTGGTTGCCGGCGGCGTGGTGCTCATCGGCGGGGATCCCGGGATCGGCAAGTCGACGCTGCTGCTCCAGTC
GCTTGCGCATCTGGCGCGCGAACGGCGCGCGCTTTACGTGAGCGGCGAAGAATCGGGCGCGCAGATTGCCTTGCGTGCGC
AGCGCCTGGGCCTCGGCGCCGCGGGCGAGGGCGGCGGGGAATTGGATTTGTTGGCGGAAATCCAGCTCGAGAAGATTCTG
GGCGCCATCGAGTCGGAAAAGCCCGACGTTGTCGTGATCGACTCTATCCAGACGGTCTATTCCGAAGCACTCAGTTCGGC
GCCGGGATCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAACTCACGCGCAGCGCCAAGCAGAGCGGCGTAACGGTGATCA
TGGTCGGCCATGTGACCAAGGAAGGCAGTCTCGCCGGGCCGCGCGTTCTCGAACACATCGTCGACACGGTGCTGTATTTC
GAGGGCGATACGCACTCGTCGTACCGGTTGGTGCGGGCGTTCAAAAATCGGTTTGGTGCCGTCAACGAGTTGGGCGTGTT
CGCGATGACGGAGAAAGGCCTGCGCGGCGTGGCGAATCCGTCGGCCTTGTTCCTCTCGCAACATGAGCAAAGCGTGCCGG
GCTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGCCCGCTGCTCGTCGAGGTGCAGGCGCTGGTCGACACGGCGCAGGTG
CCCAATCCGCGGCGTTTGGCCGTGGGGCTGGAGCAGAACCGGCTGGCAATGTTGCTCGCCGTGATGCATCGTCATGCGGG
CATCGCCTGTTTCGATCAGGATGTGTTCCTGAACGCTGTCGGTGGCGTGAAGATTTCGGAGCCGGCGGCCGATCTGGCCG
TGTTGCTGGCGATTCATTCGTCGCTGCGCAACAAGCCGCTGCCGCGCGGCATCGTGGCATTCGGCGAGGTCGGGCTGGCG
GGCGAAATCCGGCCGAGCCCGCGCGGTCAGGATCGTCTCAAGGAAGCCGCCAAACTGGGCTTTTCGATTGCGATCATCCC
GAAAGCGAATGCGCCGAAGCAACCCATCGACGGCCTCGAAGTGCATGCCGTCGACCGTTTGGAGCACGCGATTTCCGTCG
TGGCGGGGTTGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4VEA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.401

100

0.497
  radA Streptococcus mitis SK321

48.837

94.092

0.46
  radA Streptococcus pneumoniae Rx1

48.837

94.092

0.46
  radA Streptococcus pneumoniae D39

48.837

94.092

0.46
  radA Streptococcus pneumoniae R6

48.837

94.092

0.46
  radA Streptococcus pneumoniae TIGR4

48.837

94.092

0.46
  radA Streptococcus mitis NCTC 12261

48.837

94.092

0.46

Multiple sequence alignment