Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ETT62_RS03215 Genome accession   NZ_CP035437
Coordinates   623573..625234 (+) Length   553 a.a.
NCBI ID   WP_109820941.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm78.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 618573..630234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT62_RS03185 (ETT62_03185) - 618862..619716 (+) 855 WP_136021418.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  ETT62_RS03190 (ETT62_03190) xseA 619869..621209 (+) 1341 WP_002992349.1 exodeoxyribonuclease VII large subunit -
  ETT62_RS03195 (ETT62_03195) - 621187..621402 (+) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  ETT62_RS03200 (ETT62_03200) - 621402..622274 (+) 873 WP_111713724.1 polyprenyl synthetase family protein -
  ETT62_RS03205 (ETT62_03205) - 622267..623094 (+) 828 WP_020905314.1 TlyA family RNA methyltransferase -
  ETT62_RS03210 (ETT62_03210) - 623081..623551 (+) 471 WP_002983907.1 arginine repressor -
  ETT62_RS03215 (ETT62_03215) recN 623573..625234 (+) 1662 WP_109820941.1 DNA repair protein RecN Machinery gene
  ETT62_RS03220 (ETT62_03220) - 625406..626392 (+) 987 WP_136120937.1 LPXTG cell wall anchor domain-containing protein -
  ETT62_RS03225 (ETT62_03225) - 626620..627459 (+) 840 WP_109820972.1 DegV family protein -
  ETT62_RS03230 (ETT62_03230) - 627452..628294 (+) 843 WP_002992620.1 SGNH/GDSL hydrolase family protein -
  ETT62_RS03235 (ETT62_03235) - 628272..628859 (+) 588 WP_002989129.1 YpmS family protein -
  ETT62_RS03240 (ETT62_03240) - 628958..629233 (+) 276 WP_002983920.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62271.37 Da        Isoelectric Point: 4.5840

>NTDB_id=301841 ETT62_RS03215 WP_109820941.1 623573..625234(+) (recN) [Streptococcus pyogenes strain emm78.3]
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDNAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGNV
NDVLDYYDNIIKEYQLLTGDDLSSGDLESELKALEKQLVAAATNLSERRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTPEERVEEIASMIAGTDMTQAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=301841 ETT62_RS03215 WP_109820941.1 623573..625234(+) (recN) [Streptococcus pyogenes strain emm78.3]
ATGTTATTAGAAATTTCTATTAAAAATTTTGCTATTATTGATGAAATTTCCCTAAATTTTGAAAATGGTATGACGGTTTT
GACGGGTGAAACTGGAGCAGGAAAGTCTATTATCATTGATGCTATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTA
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGAGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAACGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAGGAACACAAAGA
TCGTATTGATATGTTGGCCTTTCAGATAGCAGAAATTGAAGCTGCTGCCTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAGTACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATTATCAAAGAATACCAGCTATTAACAGGAGACGACTTGTCTTCAGGGGATCT
AGAATCAGAATTGAAAGCCTTAGAAAAACAATTGGTTGCTGCAGCCACTAACTTGAGTGAACGCCGCCATCAATTGGCAG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCGCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTTATTGCTATTGCTGATTATCAGTATTTTATTTCTAAAGA
AAGTAAAGAAGAGTCCACCGTTTCTAAGGTAAGGTTATTAACTCCTGAAGAACGTGTGGAAGAAATTGCTAGCATGATTG
CAGGAACAGATATGACACAAGCTGCTCTTACGCAGGCTCGTGAACTACTTGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.452

Multiple sequence alignment