Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DRA68_RS02720 Genome accession   NZ_CP030823
Coordinates   525929..526528 (+) Length   199 a.a.
NCBI ID   WP_002248501.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 14-627     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520929..531528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRA68_RS02695 (DRA68_03075) - 521236..521823 (-) 588 WP_002213845.1 superoxide dismutase -
  DRA68_RS02700 (DRA68_03085) dnaB 521985..523391 (+) 1407 WP_002219448.1 replicative DNA helicase -
  DRA68_RS02705 (DRA68_03090) pilH 523700..524377 (+) 678 WP_101079073.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DRA68_RS02710 (DRA68_03095) pilV 524401..525015 (+) 615 WP_002248499.1 type IV pilus modification protein PilV Machinery gene
  DRA68_RS02715 (DRA68_03100) pilJ 525012..525950 (+) 939 WP_101079071.1 PilW family protein Machinery gene
  DRA68_RS02720 (DRA68_03105) pilK 525929..526528 (+) 600 WP_002248501.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DRA68_RS02725 (DRA68_03110) pilX 526533..527006 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  DRA68_RS02730 (DRA68_03135) - 529137..529565 (-) 429 Protein_524 AzlC family ABC transporter permease -
  DRA68_RS02735 (DRA68_03140) dut 529708..530160 (+) 453 WP_002220679.1 dUTP diphosphatase -
  DRA68_RS02740 (DRA68_03145) dapC 530236..531423 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21935.90 Da        Isoelectric Point: 6.9099

>NTDB_id=301668 DRA68_RS02720 WP_002248501.1 525929..526528(+) (pilK) [Neisseria meningitidis strain 14-627]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISTNESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNTNNGNEEAFDNIVVQGKPIVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPHYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=301668 DRA68_RS02720 WP_002248501.1 525929..526528(+) (pilK) [Neisseria meningitidis strain 14-627]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCATTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGAGGATCAGTACCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGTGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATACAAATAATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCATCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATT
CTACCGACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCACACTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.222

100

0.869

Multiple sequence alignment