Detailed information NTG0301513

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: DSB67_RS12440
• Genome accession: NZ_CP030788
• Coordinates: 2582288..2585674 (+)
• Length: 1128 a.a.
• NCBI ID: WP_010649807.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain DS40M4
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2577288..2590674

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DSB67_RS12415 (DSB67_12420)	erpA	2577630..2577971 (-)	342	WP_005425270.1	iron-sulfur cluster insertion protein ErpA	-
DSB67_RS12420 (DSB67_12425)	hemL	2578218..2579513 (+)	1296	WP_005425271.1	glutamate-1-semialdehyde 2,1-aminomutase	-
DSB67_RS12425 (DSB67_12430)	-	2579873..2580958 (+)	1086	WP_005425277.1	AI-2E family transporter	-
DSB67_RS12430 (DSB67_12435)	rsmC	2581035..2582060 (+)	1026	WP_005531776.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
DSB67_RS12440 (DSB67_12445)	chiS	2582288..2585674 (+)	3387	WP_010649807.1	response regulator	Regulator
DSB67_RS12445 (DSB67_12450)	-	2586497..2588179 (+)	1683	WP_010649804.1	ABC transporter substrate-binding protein	-
DSB67_RS12450 (DSB67_12455)	-	2588350..2589336 (+)	987	WP_010649802.1	ABC transporter permease	-
DSB67_RS12455 (DSB67_12460)	-	2589339..2590364 (+)	1026	WP_010649800.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127248.03 Da
• Isoelectric Point: 5.3910

>NTDB_id=301513 DSB67_RS12440 WP_010649807.1 2582288..2585674(+) (chiS) [Vibrio campbellii strain DS40M4]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLEEQSTSHLLSVRDTKQQQIIDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGHDIDEARENAQQRYIKGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNFGTNLLSGRYKDTALGKTFKRLSEDVSARRKVNEDYTPVVVSDFDIENGKQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIAEINRDSSIDTLLVGSDHKPRTINTKQEDIQNSLEIVDKALAGETEVGTYSNRLGEE
MIAAFAPIETRGLTWALVVQLPEKEAFARVHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGAIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATVVDDQVRVQVVDTGQGIPAEHIEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEKEIKATESLAARGHFQIPEATFDNNDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASQAEMRHIENKLLESELRQRAEVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKFLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDKDQLQKLKELGGEFTRLADKALGNKKDKQELMREVLVDTMTHA
LEYWESVTGETKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPDRAYIEAQRD
KMQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=301513 DSB67_RS12440 WP_010649807.1 2582288..2585674(+) (chiS) [Vibrio campbellii strain DS40M4]
ATGTTTAAATTCTACAAAAAGCAGAAATTTAAGCGACTGCAAAGCACGCTAATGACCGCGTTTTTGGTTCTTAGTATTAC
GCCACTGACGATAACTGCTATTTTCTTCCTCCAATCCCACAGTAAAGATTTGGAAGAACAGAGCACATCCCATTTACTCT
CAGTCCGTGATACCAAACAACAACAGATCATCGACTACTTTGCAGCTCAAGAAACCGAAGTTATGGGCTTTGTTCGCTCA
GAATTGGCTTATGCCAGTGGCGGACGATTCTACGGTTTGGTCAATGCCTTTAGCCGATTAGGCCACGATATCGATGAAGC
AAGAGAGAATGCACAGCAACGCTATATCAAAGGCAGCGGCGATCAAATCAAAACGTCGATTTTGCCAGAATCTTCCAACT
ACGTTGGCAGTGAGCGTTATCGTCTTCTGCATAAACGTTATCACTGGGCTTACCTAGAGCTATTAAAGCGCTCTGATTTC
AACGATATTTTATTAGTTGATATCGACGGTAACGTTACTTATTCGATCAATAAAGATGATAACTTCGGCACCAACCTCCT
CAGCGGCCGTTACAAAGACACAGCTTTGGGAAAAACATTTAAACGCCTCTCCGAGGATGTAAGCGCGCGCCGAAAAGTGA
ATGAAGATTACACGCCTGTCGTGGTATCCGACTTTGACATTGAAAACGGTAAGCAAGTCGCTTGGTTGGGTGCGCCTATT
GTTCAGCAAGGCTATCTGCATAGCTATGCAATGTTCCGCTTGCCAAACAATGGCATCACAAAGCTGATTGCAGAAATCAA
TCGTGACTCTTCAATTGATACCTTATTAGTTGGCAGTGACCACAAACCTCGTACCATCAACACCAAGCAAGAAGACATCC
AAAACAGTTTAGAGATCGTCGACAAAGCTTTAGCTGGCGAAACGGAAGTGGGCACTTACAGCAACCGTCTAGGCGAAGAG
ATGATTGCGGCATTTGCACCTATTGAGACTCGCGGTCTCACTTGGGCTCTTGTTGTACAACTTCCTGAGAAAGAGGCCTT
TGCACGTGTCCATCAGCTCGAGAAACTGTTTGTCATTGCTATGCTAATAGCGATCATCTTGGTTGTGATTGCTTCACACT
ACTTATCTAATTTCATCACCTCTCCGCTGCTTAAGCTGACTTGGGCAGCAGAGAAAGTATCTGCTGGCGATCTGGACGAA
ACCACCTTTAATACCGAACGTAAAGATGAAATCGGTCGACTAGCGATCAGCTTTGAGCGTATGCAGCGCTCAATTCGTGA
AAAGATCCAAACCATCAAGCAACAAAACGAAGAGCTAGAGAGCAACATCAAACTGATCCAAAAGCAAAACGAAGAATTGC
AGTTGGCAGATAAGCTGAAAGATGAATTCCTAGCGACAACCTCTCACGAGTTACGCACACCATTGCACGGTATGGTTGGC
ATTGCAGAGACACTGGTGTCTGGTGCAAATGGCGCGATACCAGCGAGCCAGAAGTACCAATTGGACATCATCATCAAGAG
TGGTCAGCGCCTAGCAAACCTCGTTGATGATCTATTGGATTACCACAAGATGCGCTACGGCAGCATGGATATCCAAAAGT
CTGCAGTGAGCCTAGCCAGTGCAACACGCTTGGTGCTGGAGCTTTCTGGTCACCTATTGGGTAACAAAACCATCCGCATC
ATTAATCAAGTGCCAGCGGATCTGAAAGCAGTCTCAGCAGATCCTCAGCGTTTGGAACAAGTGCTGTATAACTTGATTGG
CAACGCTATTAAGTACACTTCAGAAGGCAAAATCGTTATCTCAGCGACCGTTGTAGACGATCAAGTCCGAGTACAAGTGG
TCGATACTGGTCAGGGTATTCCAGCTGAACACATAGAGCATATCTTCGAACCTCTTATCCAAGCTGGTCAAGATGCTAGT
CGTTACCGTCAAGGTGCAGGACTGGGTCTATCCATCAGCCGTCAACTTATCGAGTTGATGGGCGGTTCATTGTATGTCAG
TAGCCAACCTATGGTCGGAACGACATTCAGCTTCACCTTGCCACTCGCTAGTGAAAAAGAAATCAAAGCGACGGAAAGCC
TTGCCGCACGCGGGCATTTCCAAATCCCTGAGGCGACATTTGACAACAATGACGACTTGTCTCTACCAGAAAACCCAGAT
GGTCCATTGCTGTACGTTGCTGATGATGAGCCCGTCAACCTTCGCGTTCTTGAAAGCTTCTTAAGGCTTGAAGGCTACCG
AGTTCGTACCATTTCAGACGGCCCTGAGACACTCGCTTTAATTGAGCAAGAGAAGCCTGAGTTGCTGCTACTGGATATTA
TGATGCCAGGCATGAGCGGCTATCAGGTTTGTAGTGAACTGCGTGAAACTTACGATCATGCAGAGCTACCAATCATTATG
CTCACAGCGCTAAGCCAAACCGAAGACCGCGTTAGGGGCTTTGAAGCGGGAGCGAACGATTACCTAACCAAACCATTTAA
CAAGCAAGAGCTCGCGGCACGTATTCAGGCCCACTTGACGGCAAGTCAGGCTGAAATGCGCCACATCGAGAACAAGTTAC
TGGAATCAGAGCTACGCCAGCGTGCTGAAGTCGAAGCCAGCCTGCTCGAGACACAAGGTAGACTGCTAGAACAGCTAGAA
TCGGCACCTGAGGCGATTATTTGTCTTCGTGAAGATCAACGTATTCGCTTTGCTAACGAAGCAGCATGTAAGCTATTTAA
ACGTAGCCTAGAACAGCTAAAACGTTCTTCCGCTGATGAGCTAATTGCACCTAAGTTCCTTACGGTTAAGCAGCCGCACT
ACTGTGGCAAGATTGATATCTACATCGAAGATATCCGTCAAAACATTGAAGCAGACATCCTCAAGCTGCCTGAAGGCTCT
GGTTTAGACGTCATGTATATCTTCAATGTGGGAGGCGGCGCGAATGCAGCTCGTATCCATAACTTAGAGACGGCCGTTGA
AGTACTTTCAAGTTACGCATTTGATGGCGACAAAGACCAGCTGCAGAAACTGAAAGAACTTGGCGGTGAGTTTACTCGCC
TTGCAGATAAAGCATTGGGTAACAAAAAGGACAAACAAGAGCTGATGCGCGAAGTATTAGTCGATACGATGACTCACGCA
TTGGAATATTGGGAATCGGTGACTGGAGAAACCAAGTTTGCCTTTGCTGAACAAAGTGGTTTATGGCGCGTCTACCTCGA
CCGCAGTACATTGCAAACTCGTACGCTCGATAAATACATGCGTATTGAGACTTTGCCTAAGACACCGCGCTGGAGGACAG
TACTAAGCTCAATTGAATTCATTCTGGAGCACTGTAAAGAACAAAGCCCAGATCGCGCTTATATAGAGGCACAGCGCGAT
AAGATGCAAAGACTCCTTACGAGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• HAMP domain (HAMP) (375-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.549	100	0.767