Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   DSB67_RS10605 Genome accession   NZ_CP030788
Coordinates   2197271..2198674 (-) Length   467 a.a.
NCBI ID   WP_010645716.1    Uniprot ID   -
Organism   Vibrio campbellii strain DS40M4     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2192271..2203674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB67_RS10570 (DSB67_10575) moaE 2192804..2193259 (-) 456 WP_010645711.1 molybdopterin synthase catalytic subunit MoaE -
  DSB67_RS10575 (DSB67_10580) moaD 2193261..2193518 (-) 258 WP_010645713.1 molybdopterin synthase sulfur carrier subunit -
  DSB67_RS10580 (DSB67_10585) moaC 2193518..2193994 (-) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  DSB67_RS10585 (DSB67_10590) moaB 2194021..2194533 (-) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  DSB67_RS10590 (DSB67_10595) moaA 2194634..2195623 (-) 990 WP_005531402.1 GTP 3',8-cyclase MoaA -
  DSB67_RS10595 (DSB67_10600) - 2195921..2196814 (+) 894 WP_010645714.1 YvcK family protein -
  DSB67_RS10600 (DSB67_10605) luxU 2196930..2197274 (-) 345 WP_010645715.1 quorum-sensing phosphorelay protein LuxU -
  DSB67_RS10605 (DSB67_10610) luxO 2197271..2198674 (-) 1404 WP_010645716.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  DSB67_RS10610 (DSB67_10615) uvrB 2199017..2201047 (-) 2031 WP_010645717.1 excinuclease ABC subunit UvrB -
  DSB67_RS10620 (DSB67_10625) - 2201858..2202298 (-) 441 WP_010645719.1 hypothetical protein -
  DSB67_RS10625 (DSB67_10630) - 2202318..2203649 (-) 1332 WP_010645720.1 hypothetical protein -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52106.58 Da        Isoelectric Point: 5.6912

>NTDB_id=301512 DSB67_RS10605 WP_010645716.1 2197271..2198674(-) (luxO) [Vibrio campbellii strain DS40M4]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIEGLNHRIPDLILLDLRLPDMTGMDVLHAVKQSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
VAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=301512 DSB67_RS10605 WP_010645716.1 2197271..2198674(-) (luxO) [Vibrio campbellii strain DS40M4]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCCGTTGCGGCACTTTACCG
TTCTTACCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAGGCCTGAACCATCGCA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGCAAAGCCAT
CCAGACGTGCCAATCATCTTCATGACAGCCCATGGTTCTATCGATACTGCGGTAGAGGCGATGCGTCACGGTTCTCAAGA
CTTCCTAATCAAACCATGTGAAGCAGACCGTTTACGTGTCACGGTGAATAATGCGATCCGCAAAGCAACCAAATTAAAGA
ATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGTAGCCAAACGATGCAGCAGGTTTACCGTACC
ATTGACTCGGCAGCGAGCAGTAAAGCGAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAAGTGTGTGCCGAAGC
GATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATCAACTGTGCGGCAATCCCGAAAGACCTTATTGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCGTTTACTGGTGCTGCGAATGACCGACAAGGTGCGGCAGAGCTTGCTGATGGC
GGCACGTTGTTCCTTGATGAACTCTGTGAAATGGACTTGGATCTTCAAACTAAGCTATTGCGCTTTATCCAAACGGGTAC
ATTCCAAAAAGTCGGTTCTTCTAAAATGAAGAGCGTGGATGTACGCTTTGTGTGTGCAACTAACCGAGACCCTTGGAAAG
AAGTGCAAGAAGGCCGTTTCCGTGAAGACTTGTATTACCGTTTGTACGTGATTCCTTTGCACCTTCCGCCGCTGCGTGAG
CGTGGTGAAGATGTTATTGAAATTGCATACTCGCTGCTTGGTTATATGTCTCATGAGGAAGGCAAGAGTTTCGTCCGTTT
CGCACAAGACGTGATCGAAAGATTCAACAGCTACGAATGGCCGGGTAACGTTCGCCAATTGCAAAACGTATTACGTAATA
TCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGTTACCGCCACCACTGAATCAGCCTGTTGTGCGCCAATCG
GTAGCAAAATTTATTGAACCTGACATTATGACGGTGTCAGATATTATGCCGCTTTGGATGACAGAGAAAATGGCCATCGA
GCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATTTGGATGTTAGCCCATCAACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.161

95.931

0.827

Multiple sequence alignment