Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   DSB67_RS06725 Genome accession   NZ_CP030788
Coordinates   1422240..1423661 (-) Length   473 a.a.
NCBI ID   WP_005528196.1    Uniprot ID   A7MVI1
Organism   Vibrio campbellii strain DS40M4     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1417240..1428661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB67_RS06700 (DSB67_06700) - 1417916..1418566 (+) 651 WP_010647542.1 thiopurine S-methyltransferase -
  DSB67_RS06705 (DSB67_06705) purT 1418653..1419828 (-) 1176 WP_010647545.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  DSB67_RS06710 (DSB67_06710) cdd 1419976..1420863 (-) 888 WP_010647547.1 cytidine deaminase -
  DSB67_RS06715 (DSB67_06715) - 1421128..1421805 (-) 678 WP_005428010.1 LrgB family protein -
  DSB67_RS06720 (DSB67_06720) - 1421807..1422181 (-) 375 WP_029388781.1 CidA/LrgA family protein -
  DSB67_RS06725 (DSB67_06725) sbcB 1422240..1423661 (-) 1422 WP_005528196.1 exodeoxyribonuclease I Machinery gene
  DSB67_RS06730 (DSB67_06730) - 1423823..1424503 (-) 681 WP_010647556.1 DUF1826 domain-containing protein -
  DSB67_RS06735 (DSB67_06735) - 1424731..1426104 (-) 1374 WP_010647558.1 L-cystine transporter -
  DSB67_RS06740 (DSB67_06740) - 1426298..1426993 (-) 696 WP_010647560.1 NAD(P)H-binding protein -
  DSB67_RS06750 (DSB67_06750) - 1427650..1428261 (+) 612 WP_010647561.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54483.76 Da        Isoelectric Point: 4.9244

>NTDB_id=301510 DSB67_RS06725 WP_005528196.1 1422240..1423661(-) (sbcB) [Vibrio campbellii strain DS40M4]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPDAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=301510 DSB67_RS06725 WP_005528196.1 1422240..1423661(-) (sbcB) [Vibrio campbellii strain DS40M4]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAATTCGCTGGCGTTCGTACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGACGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACACGTTACACCTGTTATCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAGCATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGGTTGC
AACGATTGAGATGGCGAAGAAAGTGAAGGCCGCTCAACCAAAACTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCGTTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGGGACGAATTGGGTGACCTACTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCGTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTAATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGCTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGTTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCAGGCACCTTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7MVI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.07

100

0.791

Multiple sequence alignment