Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CX698_RS08510 Genome accession   NZ_CP030787
Coordinates   1726663..1727292 (+) Length   209 a.a.
NCBI ID   WP_000677462.1    Uniprot ID   -
Organism   Escherichia albertii strain 2013C-4143     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1721663..1732292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CX698_RS08490 - 1722055..1723815 (-) 1761 WP_059253586.1 Lon protease family protein -
  CX698_RS08495 matP 1724001..1724453 (+) 453 WP_000877164.1 macrodomain Ter protein MatP -
  CX698_RS08500 ompA 1724528..1725580 (-) 1053 WP_024164892.1 porin OmpA -
  CX698_RS08505 sulA 1725936..1726445 (-) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  CX698_RS08510 sxy/tfoX 1726663..1727292 (+) 630 WP_000677462.1 TfoX/Sxy family DNA transformation protein Regulator
  CX698_RS08515 yccS 1727252..1729417 (-) 2166 WP_072243810.1 YccS family putative transporter -
  CX698_RS08520 - 1729427..1729873 (-) 447 WP_001261228.1 YccF domain-containing protein -
  CX698_RS08525 helD 1729996..1732050 (+) 2055 WP_113640214.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24261.18 Da        Isoelectric Point: 9.0264

>NTDB_id=301484 CX698_RS08510 WP_000677462.1 1726663..1727292(+) (sxy/tfoX) [Escherichia albertii strain 2013C-4143]
MKGLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=301484 CX698_RS08510 WP_000677462.1 1726663..1727292(+) (sxy/tfoX) [Escherichia albertii strain 2013C-4143]
ATGAAAGGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACACGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.952

100

0.9

Multiple sequence alignment