Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AYN53_RS05780 Genome accession   NZ_CP030783
Coordinates   1154251..1154880 (+) Length   209 a.a.
NCBI ID   WP_059219814.1    Uniprot ID   -
Organism   Escherichia albertii strain 2012EL-1823B     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1149251..1159880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYN53_RS05760 - 1149643..1151403 (-) 1761 WP_113649734.1 Lon protease family protein -
  AYN53_RS05765 matP 1151589..1152041 (+) 453 WP_059219816.1 macrodomain Ter protein MatP -
  AYN53_RS05770 ompA 1152116..1153168 (-) 1053 WP_024164823.1 porin OmpA -
  AYN53_RS05775 sulA 1153524..1154033 (-) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  AYN53_RS05780 sxy/tfoX 1154251..1154880 (+) 630 WP_059219814.1 TfoX/Sxy family DNA transformation protein Regulator
  AYN53_RS05785 yccS 1154840..1157005 (-) 2166 WP_072243494.1 YccS family putative transporter -
  AYN53_RS05790 - 1157015..1157461 (-) 447 WP_001261228.1 YccF domain-containing protein -
  AYN53_RS05795 helD 1157584..1159638 (+) 2055 WP_059219813.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24362.39 Da        Isoelectric Point: 9.2220

>NTDB_id=301458 AYN53_RS05780 WP_059219814.1 1154251..1154880(+) (sxy/tfoX) [Escherichia albertii strain 2012EL-1823B]
MKKLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=301458 AYN53_RS05780 WP_059219814.1 1154251..1154880(+) (sxy/tfoX) [Escherichia albertii strain 2012EL-1823B]
ATGAAAAAGCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAATGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTAGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.474

100

0.895

Multiple sequence alignment