Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CCF18_RS03945 Genome accession   NZ_CP030781
Coordinates   815407..816036 (+) Length   209 a.a.
NCBI ID   WP_000839162.1    Uniprot ID   A0A2T3RS91
Organism   Escherichia albertii strain 07-3866     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 810407..821036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCF18_RS03925 - 810799..812559 (-) 1761 WP_000156442.1 AAA family ATPase -
  CCF18_RS03930 matP 812745..813197 (+) 453 WP_000877164.1 macrodomain Ter protein MatP -
  CCF18_RS03935 ompA 813272..814324 (-) 1053 WP_024164823.1 porin OmpA -
  CCF18_RS03940 sulA 814680..815189 (-) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  CCF18_RS03945 sxy/tfoX 815407..816036 (+) 630 WP_000839162.1 TfoX/Sxy family DNA transformation protein Regulator
  CCF18_RS03950 yccS 815996..818161 (-) 2166 WP_125317279.1 YccS family putative transporter -
  CCF18_RS03955 - 818171..818617 (-) 447 WP_001261228.1 YccF domain-containing protein -
  CCF18_RS03960 helD 818740..820794 (+) 2055 WP_059215651.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24291.21 Da        Isoelectric Point: 9.0264

>NTDB_id=301436 CCF18_RS03945 WP_000839162.1 815407..816036(+) (sxy/tfoX) [Escherichia albertii strain 07-3866]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=301436 CCF18_RS03945 WP_000839162.1 815407..816036(+) (sxy/tfoX) [Escherichia albertii strain 07-3866]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCAGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RS91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

90.431

100

0.904

Multiple sequence alignment