Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CYM74_RS05575 Genome accession   NZ_CP030778
Coordinates   1094978..1095607 (-) Length   209 a.a.
NCBI ID   WP_000839162.1    Uniprot ID   A0A2T3RS91
Organism   Escherichia albertii strain 05-3106     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089978..1100607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYM74_RS05560 helD 1090220..1092274 (-) 2055 WP_059215651.1 DNA helicase IV -
  CYM74_RS05565 - 1092397..1092843 (+) 447 WP_001261228.1 YccF domain-containing protein -
  CYM74_RS05570 yccS 1092853..1095018 (+) 2166 WP_072243810.1 YccS family putative transporter -
  CYM74_RS05575 sxy/tfoX 1094978..1095607 (-) 630 WP_000839162.1 TfoX/Sxy family DNA transformation protein Regulator
  CYM74_RS05580 sulA 1095825..1096334 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  CYM74_RS05585 ompA 1096690..1097742 (+) 1053 WP_024164823.1 porin OmpA -
  CYM74_RS05590 matP 1097817..1098269 (-) 453 WP_000877164.1 macrodomain Ter protein MatP -
  CYM74_RS05595 - 1098455..1100215 (+) 1761 WP_059239028.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24291.21 Da        Isoelectric Point: 9.0264

>NTDB_id=301415 CYM74_RS05575 WP_000839162.1 1094978..1095607(-) (sxy/tfoX) [Escherichia albertii strain 05-3106]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=301415 CYM74_RS05575 WP_000839162.1 1094978..1095607(-) (sxy/tfoX) [Escherichia albertii strain 05-3106]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGAGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCGGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RS91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

90.431

100

0.904

Multiple sequence alignment