Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DSB71_RS19225 Genome accession   NZ_CP030768
Coordinates   3786283..3786912 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2017C-4173W12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3781283..3791912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB71_RS19200 ycbZ 3781685..3783445 (-) 1761 WP_000156482.1 Lon protease family protein -
  DSB71_RS19205 matP 3783631..3784083 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DSB71_RS19210 ompA 3784159..3785199 (-) 1041 WP_001309394.1 porin OmpA -
  DSB71_RS19220 sulA 3785555..3786064 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DSB71_RS19225 sxy/tfoX 3786283..3786912 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DSB71_RS19230 yccS 3786875..3789037 (-) 2163 WP_000875041.1 YccS family putative transporter -
  DSB71_RS19235 yccF 3789047..3789493 (-) 447 WP_001261235.1 YccF domain-containing protein -
  DSB71_RS19240 helD 3789616..3791670 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=301391 DSB71_RS19225 WP_000839153.1 3786283..3786912(+) (sxy/tfoX) [Escherichia coli strain 2017C-4173W12]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=301391 DSB71_RS19225 WP_000839153.1 3786283..3786912(+) (sxy/tfoX) [Escherichia coli strain 2017C-4173W12]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment