Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DSB73_RS04830 Genome accession   NZ_CP030767
Coordinates   821497..822126 (+) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli strain 2017C-4109     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 816497..827126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB73_RS04810 ycbZ 816899..818659 (-) 1761 WP_000156526.1 Lon protease family protein -
  DSB73_RS04815 matP 818845..819297 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DSB73_RS04820 ompA 819372..820412 (-) 1041 WP_000750416.1 porin OmpA -
  DSB73_RS04825 sulA 820769..821278 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DSB73_RS04830 sxy/tfoX 821497..822126 (+) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DSB73_RS04835 yccS 822089..824251 (-) 2163 WP_000875023.1 YccS family putative transporter -
  DSB73_RS04840 yccF 824261..824707 (-) 447 WP_001261230.1 YccF domain-containing protein -
  DSB73_RS04845 helD 824830..826884 (+) 2055 WP_001301436.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=301352 DSB73_RS04830 WP_000839159.1 821497..822126(+) (sxy/tfoX) [Escherichia coli strain 2017C-4109]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=301352 DSB73_RS04830 WP_000839159.1 821497..822126(+) (sxy/tfoX) [Escherichia coli strain 2017C-4109]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTCGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment