Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   DPR03_RS02155 Genome accession   NZ_CP030754
Coordinates   429286..430149 (+) Length   287 a.a.
NCBI ID   WP_213030828.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 424286..435149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR03_RS02130 - 424575..425777 (+) 1203 WP_071319872.1 CsgG/HfaB family protein -
  DPR03_RS02135 - 425861..426538 (+) 678 WP_004809734.1 hypothetical protein -
  DPR03_RS02140 - 426798..427373 (-) 576 WP_071319873.1 xanthine phosphoribosyltransferase -
  DPR03_RS02145 - 427464..428177 (-) 714 WP_071319874.1 DUF3108 domain-containing protein -
  DPR03_RS02150 - 428329..429018 (-) 690 WP_071319875.1 hypothetical protein -
  DPR03_RS02155 tonB2 429286..430149 (+) 864 WP_213030828.1 energy transducer TonB Machinery gene
  DPR03_RS02160 - 430146..430445 (-) 300 WP_004896079.1 antibiotic biosynthesis monooxygenase family protein -
  DPR03_RS02165 - 430477..430875 (-) 399 WP_071319877.1 hypothetical protein -
  DPR03_RS02170 ybeY 431019..431501 (-) 483 WP_005223309.1 rRNA maturation RNase YbeY -
  DPR03_RS02175 - 431524..432600 (-) 1077 WP_071319878.1 PhoH family protein -
  DPR03_RS02180 miaB 432640..434097 (-) 1458 WP_004809718.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32771.36 Da        Isoelectric Point: 9.7143

>NTDB_id=301320 DPR03_RS02155 WP_213030828.1 429286..430149(+) (tonB2) [Acinetobacter schindleri strain H3]
MPLVKSWWKDPIFSSAVGIAALLHIMILMLQFGMPSEQDTSTKEIAVSLRVSNDKIEHADFLAQTDQQGSGQFREAHRMS
SDAPLPMPDQTAGKEAMLQNSQDMLQQKQELSFEEKVLMTTLSWQKQAEENQRKKRQEELNSQFQAKAAMVASLEAQYTQ
RQKNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRFYPKSARIQRLAGDVRLMVILNQNGGIRAIRLLDSSGYT
VLDEAARTSLRKAAPFGAFDANMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 864 bp        

>NTDB_id=301320 DPR03_RS02155 WP_213030828.1 429286..430149(+) (tonB2) [Acinetobacter schindleri strain H3]
ATGCCTTTGGTTAAATCATGGTGGAAAGATCCAATTTTTAGCAGTGCTGTAGGGATTGCTGCATTATTACATATCATGAT
TTTAATGCTGCAGTTTGGAATGCCATCGGAACAGGATACTTCGACCAAGGAAATTGCAGTTAGCCTGCGCGTCAGTAATG
ACAAAATCGAGCATGCCGATTTTCTTGCCCAGACAGATCAGCAAGGTTCCGGTCAGTTCCGTGAAGCGCATCGTATGTCC
AGTGATGCTCCATTGCCGATGCCAGATCAGACAGCTGGAAAAGAAGCAATGCTTCAAAACAGCCAAGATATGCTGCAACA
AAAACAAGAGTTGAGCTTTGAAGAAAAAGTTCTGATGACAACCCTAAGCTGGCAGAAACAGGCAGAAGAAAATCAGCGCA
AGAAACGTCAGGAAGAACTCAACAGCCAGTTTCAAGCCAAAGCTGCTATGGTCGCGAGTCTGGAAGCTCAATATACGCAG
CGCCAGAAAAACTTTAGCCGTCAGCAGAAAATTAAAACTGTTGACGGTATCCAAGCCAAGCAGGATGTATCTGCAGCTTA
TCTGGAAAAATTCCGTCAAAAAGTCGAATTTTATGGGAATCGTTTTTATCCTAAATCTGCCCGTATACAGCGTTTGGCGG
GCGACGTCCGCTTAATGGTGATTTTGAATCAAAACGGGGGTATTCGAGCGATTCGCTTGTTGGACTCTTCTGGTTATACT
GTATTGGATGAAGCTGCTCGAACCTCATTACGTAAGGCTGCGCCGTTTGGTGCTTTTGATGCCAACATGAAAGATATTTC
AGAGTTAAGAATTATCCGAACCTGGCGTTTTGATCCGGCAGAAGCCGAGTTTGAAGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(201-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

70.714

97.561

0.69

Multiple sequence alignment