Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   DPR03_RS00745 Genome accession   NZ_CP030754
Coordinates   153939..155093 (-) Length   384 a.a.
NCBI ID   WP_071320828.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 148939..160093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR03_RS00715 - 149421..149801 (-) 381 WP_004814264.1 RcnB family protein -
  DPR03_RS00720 - 150015..150560 (-) 546 WP_004814265.1 glutathione peroxidase -
  DPR03_RS00725 - 150784..151695 (+) 912 WP_071320826.1 DMT family transporter -
  DPR03_RS16095 - 151766..151918 (-) 153 WP_228152212.1 hypothetical protein -
  DPR03_RS00735 - 152091..152666 (-) 576 WP_004895281.1 L-threonylcarbamoyladenylate synthase -
  DPR03_RS00740 dprA 152707..153846 (-) 1140 WP_071320827.1 DNA-processing protein DprA Machinery gene
  DPR03_RS00745 tsaP 153939..155093 (-) 1155 WP_071320828.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  DPR03_RS00750 def 155214..155744 (+) 531 WP_005220256.1 peptide deformylase -
  DPR03_RS00755 - 155837..156256 (+) 420 WP_071320829.1 DUF2946 family protein -
  DPR03_RS00760 - 156328..158343 (+) 2016 WP_071320830.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42088.32 Da        Isoelectric Point: 9.0719

>NTDB_id=301304 DPR03_RS00745 WP_071320828.1 153939..155093(-) (tsaP) [Acinetobacter schindleri strain H3]
MKKVLKGMPSFSALGIKNQMLALAVCVGVGMGTISTTHAAPARNVNPPSLKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWAGNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCAGIINRYLGTNKLQPQVRIESLNNTIPVIPLAHIQQWLE
RYTIMAADSIEGTPYILGTADQRVLAGKGQKVYARGNGLEVGQRYAVYREAEPYILTDANGKKYTAALELQQVASGIAVR
GEGDITTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENNISGGQIIRVLGSIGTAARHSVVTIDRGIAHGVQSGH
VFSVNQQGEVVTDPKTKERVQLPGERIGNVMVFKTFDQFSYAYVLDSELPIKVGATIQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=301304 DPR03_RS00745 WP_071320828.1 153939..155093(-) (tsaP) [Acinetobacter schindleri strain H3]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGATTAAAAATCAAATGCTCGCACTTGCAGTTTGTGT
GGGTGTTGGTATGGGGACAATTTCAACTACACATGCAGCACCAGCTCGTAATGTCAATCCACCAAGCCTGAAAGCATCAG
CACCGAATGTCTATGTGGTAAAAAAAGGTGACACATTATGGGATATTTCCAAGCGTTTTCTTAAAAATCCGGTACGCTGG
CCAGAAATCTGGGCAGGTAATAAGCATGTGAAAAATCCACACTGGATTTTTCCAGGTGACCGTCTGCTGATGTGCGATTA
CCAGGGCCGCCCAATCATTGGTAAAGATGAAGGTGATGGCTGTGCCGGTATTATCAACCGTTACCTTGGCACGAATAAGT
TACAGCCTCAGGTGCGTATCGAATCGCTCAACAATACTATTCCTGTTATTCCTTTAGCCCATATCCAGCAATGGCTAGAG
CGCTATACAATTATGGCAGCAGACTCTATTGAAGGCACTCCTTATATTCTGGGTACAGCTGATCAACGTGTACTGGCTGG
TAAAGGCCAGAAAGTTTATGCACGTGGCAATGGCCTGGAAGTGGGTCAACGCTATGCAGTATACCGCGAAGCTGAACCTT
ATATACTGACTGATGCCAATGGTAAAAAATACACCGCTGCCCTAGAACTGCAACAGGTTGCTTCTGGTATCGCAGTCCGT
GGTGAAGGTGATATCACCACACTGGAACTGACCGATAGCTATAATGCTGAAGTCCGTCGTGGTGACCGGGTACTACCAGA
ATATGATCCAATGCTGCCTACCCTGTTCTATCCAGTAAATGCGGAAAACAACATTTCAGGTGGTCAGATCATTCGTGTAT
TGGGTTCAATTGGTACAGCTGCACGTCATAGTGTTGTCACCATTGACCGTGGCATAGCACATGGCGTTCAGTCTGGTCAT
GTGTTTAGTGTGAATCAGCAAGGTGAAGTCGTGACTGATCCAAAAACCAAAGAGCGTGTGCAGCTTCCGGGCGAACGTAT
TGGTAATGTCATGGTCTTCAAAACGTTTGATCAGTTCAGCTATGCCTATGTCCTAGACAGTGAATTGCCGATCAAAGTGG
GCGCTACCATTCAGCCACCGCTGCTGGACGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.312

100

0.685

Multiple sequence alignment