Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C1S65_RS24460 Genome accession   NZ_CP030750
Coordinates   5355937..5356338 (-) Length   133 a.a.
NCBI ID   WP_063546904.1    Uniprot ID   A0AAD0LC43
Organism   Pseudomonas putida strain NX-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5350937..5361338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S65_RS24445 (C1S65_24445) - 5352901..5354958 (-) 2058 WP_063546550.1 methyl-accepting chemotaxis protein -
  C1S65_RS24450 (C1S65_24450) - 5354973..5355527 (-) 555 WP_054894837.1 chemotaxis protein CheW -
  C1S65_RS24455 (C1S65_24455) pilH 5355524..5355889 (-) 366 WP_012274551.1 twitching motility response regulator PilH -
  C1S65_RS24460 (C1S65_24460) pilG 5355937..5356338 (-) 402 WP_063546904.1 response regulator Regulator
  C1S65_RS24465 (C1S65_24465) gshB 5356534..5357487 (+) 954 WP_063546552.1 glutathione synthase -
  C1S65_RS24470 (C1S65_24470) - 5357577..5358476 (+) 900 WP_063546554.1 energy transducer TonB -
  C1S65_RS24475 (C1S65_24475) - 5358571..5359140 (+) 570 WP_054894840.1 YqgE/AlgH family protein -
  C1S65_RS24480 (C1S65_24480) ruvX 5359140..5359565 (+) 426 WP_112899343.1 Holliday junction resolvase RuvX -
  C1S65_RS24485 (C1S65_24485) pyrR 5359612..5360130 (+) 519 WP_054894842.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  C1S65_RS24490 (C1S65_24490) - 5360143..5361147 (+) 1005 WP_054894843.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14758.14 Da        Isoelectric Point: 6.8628

>NTDB_id=301263 C1S65_RS24460 WP_063546904.1 5355937..5356338(-) (pilG) [Pseudomonas putida strain NX-1]
MEQPLKVMVIDDSRTIRRTAQMLLGEVGCEVITASDGFDALAKIVDHKPRIIFVDVLMPRLDGYQTCAVIKHNSAFKDIP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPEFAAQAQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=301263 C1S65_RS24460 WP_063546904.1 5355937..5356338(-) (pilG) [Pseudomonas putida strain NX-1]
ATGGAACAGCCCCTGAAGGTGATGGTGATCGACGATTCCCGCACCATCCGCCGCACCGCCCAGATGCTGCTGGGCGAGGT
GGGTTGCGAGGTGATCACCGCCAGCGACGGTTTCGATGCCCTGGCCAAGATCGTCGATCACAAGCCGCGGATCATCTTCG
TCGATGTACTGATGCCGCGTCTGGACGGTTACCAGACCTGCGCAGTGATCAAGCACAACAGTGCGTTCAAGGATATCCCG
GTGATCCTGCTGTCGTCGCGTGACGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGCTCCGATCAGTTCCTCACCAA
ACCGTTCAGCAAGGAAGAACTACTCGACGCGATCCGTGCCCACGTGCCCGAATTCGCCGCGCAGGCACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.833

90.226

0.639

Multiple sequence alignment