Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C1S65_RS22650 Genome accession   NZ_CP030750
Coordinates   4926990..4928357 (-) Length   455 a.a.
NCBI ID   WP_054894041.1    Uniprot ID   -
Organism   Pseudomonas putida strain NX-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4921990..4933357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S65_RS22635 (C1S65_22635) - 4922352..4925021 (-) 2670 WP_204360775.1 TonB-dependent receptor -
  C1S65_RS22640 (C1S65_22640) - 4925356..4926345 (-) 990 WP_112899177.1 FecR family protein -
  C1S65_RS22645 (C1S65_22645) - 4926414..4926917 (-) 504 WP_112899178.1 RNA polymerase sigma factor -
  C1S65_RS22650 (C1S65_22650) radA 4926990..4928357 (-) 1368 WP_054894041.1 DNA repair protein RadA Machinery gene
  C1S65_RS22655 (C1S65_22655) mscL 4928537..4928950 (+) 414 WP_112899179.1 large-conductance mechanosensitive channel protein MscL -
  C1S65_RS22660 (C1S65_22660) - 4928993..4929769 (-) 777 WP_112899180.1 ferredoxin--NADP reductase -
  C1S65_RS22665 (C1S65_22665) - 4929974..4930687 (+) 714 WP_112899181.1 autoinducer binding domain-containing protein -
  C1S65_RS22670 (C1S65_22670) - 4930779..4931903 (+) 1125 WP_063546144.1 methyltransferase -
  C1S65_RS22675 (C1S65_22675) - 4932508..4932753 (+) 246 WP_054894036.1 DUF3077 domain-containing protein -
  C1S65_RS22680 (C1S65_22680) - 4932922..4933062 (-) 141 WP_063546145.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48737.19 Da        Isoelectric Point: 6.8985

>NTDB_id=301262 C1S65_RS22650 WP_054894041.1 4926990..4928357(-) (radA) [Pseudomonas putida strain NX-1]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPAGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATQMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=301262 C1S65_RS22650 WP_054894041.1 4926990..4928357(-) (radA) [Pseudomonas putida strain NX-1]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAATGGGCCGGCCAGTGTGGCGAATG
CGGCGCCTGGAACACCCTGGTCGAGACCATGATCGAAAGCGGCGGCGCTGCAGCGCCTGCCGGGCGTGCGGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTGAGTGTCGAGGAGATCCCGCGCTTCACCACCAGCAGCACCGAGCTC
GACCGTGTGCTTGGCGGCGGCCTGGTCGATGGTTCGGTGGTGCTGATTGGCGGTGACCCGGGTATCGGCAAGTCCACCAT
CCTGCTGCAGACCCTGTGCAACATCGCCACGCAGATGCCTGCGCTGTATGTCACCGGCGAGGAGTCGCAGCAGCAGGTGG
CCATGCGTTCGCGGCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCGCGGGTGGAAAAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAGCTGCAATCGGCTCC
CGGTGGCGTGGCCCAGGTGCGCGAGAGCACGGCGCTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TTGGCCACGTGACCAAGGAAGGCTCGCTGGCAGGCCCTCGGGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGCGAATCGGACGGACGCCTGCGCCTGCTGCGAGCGGTGAAGAACCGTTTCGGCGCGGTCAACGAGCTGGGTGTGTTCGG
CATGACCGACCGTGGCCTGAAGGAGGTGTCCAACCCTTCGGCGATCTTCCTCAACCGCACCCAGGAAGAGGTGCCGGGCA
GCGTGGTGATGGCCACCTGGGAGGGCACCCGACCGATGCTGGTCGAGGTGCAGGCGCTGGTCGATGACAGCCACCTGGCC
AACCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCAATGTTGCTGGCGGTGTTGCACCGCCATGGCGGCAT
TCCCACCCATGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTCGAAACCGCCTCCGACCTGGCGCTGC
TGGCAGCGGTGATGTCGAGCCTGCGCAACCGCCCGTTGGCCCATGGCCTGCTGGTGTTCGGCGAGATCGGTCTTTCTGGC
GAGGTGCGTCCGGTGCCCAGCGGCCAGGAGCGCCTGAAGGAGGCGGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCCCCCAAGGAACCGCCAGCAGGCTTGCAGGTGATTGCGGTGACGCGTCTGGAGCAGGCCCTGGACGCACTGT
TCGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.49
  radA Streptococcus pneumoniae Rx1

46.187

100

0.466
  radA Streptococcus pneumoniae R6

46.187

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.187

100

0.466
  radA Streptococcus pneumoniae D39

46.187

100

0.466
  radA Streptococcus mitis SK321

46.374

100

0.464
  radA Streptococcus mitis NCTC 12261

46.154

100

0.462

Multiple sequence alignment