Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ETT69_RS06310 Genome accession   NZ_CP035430
Coordinates   1222803..1224464 (-) Length   553 a.a.
NCBI ID   WP_136019201.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm55     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1217803..1229464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT69_RS06285 (ETT69_06275) - 1218852..1219127 (-) 276 WP_002983920.1 HU family DNA-binding protein -
  ETT69_RS06290 (ETT69_06280) - 1219226..1219813 (-) 588 WP_002989129.1 YpmS family protein -
  ETT69_RS06295 (ETT69_06285) - 1219791..1220633 (-) 843 WP_168389124.1 SGNH/GDSL hydrolase family protein -
  ETT69_RS06300 (ETT69_06290) - 1220626..1221465 (-) 840 WP_002989125.1 DegV family protein -
  ETT69_RS06305 (ETT69_06295) - 1221693..1222631 (-) 939 WP_136019202.1 LPXTG cell wall anchor domain-containing protein -
  ETT69_RS06310 (ETT69_06300) recN 1222803..1224464 (-) 1662 WP_136019201.1 DNA repair protein RecN Machinery gene
  ETT69_RS06315 (ETT69_06305) - 1224486..1224956 (-) 471 WP_002983907.1 arginine repressor -
  ETT69_RS06320 (ETT69_06310) - 1224943..1225770 (-) 828 WP_136019200.1 TlyA family RNA methyltransferase -
  ETT69_RS06325 (ETT69_06315) - 1225763..1226635 (-) 873 WP_023612801.1 polyprenyl synthetase family protein -
  ETT69_RS06330 (ETT69_06320) - 1226635..1226850 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  ETT69_RS06335 (ETT69_06325) xseA 1226828..1228168 (-) 1341 WP_002992349.1 exodeoxyribonuclease VII large subunit -
  ETT69_RS06340 (ETT69_06330) - 1228321..1229175 (-) 855 WP_010922486.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62308.48 Da        Isoelectric Point: 4.6407

>NTDB_id=301202 ETT69_RS06310 WP_136019201.1 1222803..1224464(-) (recN) [Streptococcus pyogenes strain emm55]
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDHDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGNV
NDVLDYYDNIIKEYQLLTGDDLSSGDLESELKALEKQLVAAATNLSERRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTPEERVEEIASMIAGTDMTQAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=301202 ETT69_RS06310 WP_136019201.1 1222803..1224464(-) (recN) [Streptococcus pyogenes strain emm55]
ATGTTATTAGAAATTTCTATTAAAAATTTTGCTATTATTGATGAAATTTCCCTAAATTTTGAAAATGGTATGACGGTTTT
GACGGGTGAAACTGGAGCAGGAAAGTCTATTATCATTGATGCTATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGAGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAGGAACACAAAGA
TCGTATTGATATGTTGGCCTTTCAGATAGCAGAAATTGAAGCTGCTGCCTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATCATGACGAT
TTTTCAAGTCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAGTACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATTCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATGTG
AATGATGTGCTTGACTACTACGATAATATTATCAAAGAATACCAGCTATTAACAGGAGACGACTTGTCTTCAGGGGATCT
AGAATCAGAATTGAAAGCCTTAGAAAAACAATTGGTTGCTGCAGCCACTAACTTGAGTGAACGCCGCCATCAATTGGCAG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTATATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTTAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCGCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTTATTGCTATTGCTGATTATCAGTATTTTATTTCTAAAGA
AAGTAAAGAAGAGTCCACCGTTTCTAAGGTAAGGTTATTAACTCCTGAAGAACGTGTGGAAGAAATTGCTAGCATGATTG
CAGGAACAGATATGACACAAGCTGCTCTTACGCAGGCTCGTGAACTACTTGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.452