Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ETT69_RS05170 Genome accession   NZ_CP035430
Coordinates   980137..981207 (-) Length   356 a.a.
NCBI ID   WP_111713766.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm55     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 975137..986207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT69_RS05150 (ETT69_05140) citX 975715..976293 (+) 579 WP_136019407.1 citrate lyase holo-[acyl-carrier protein] synthase -
  ETT69_RS05155 (ETT69_05145) - 976308..977702 (+) 1395 WP_168389114.1 oxaloacetate decarboxylase subunit alpha -
  ETT69_RS05160 (ETT69_05150) citC 977813..978865 (-) 1053 WP_136019405.1 [citrate (pro-3S)-lyase] ligase -
  ETT69_RS05165 (ETT69_05155) - 978954..979436 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  ETT69_RS05170 (ETT69_05160) xerS 980137..981207 (-) 1071 WP_111713766.1 tyrosine recombinase XerS Machinery gene
  ETT69_RS05175 (ETT69_05165) - 981676..982374 (+) 699 WP_002993300.1 S24 family peptidase -
  ETT69_RS05180 (ETT69_05170) ffh 982491..984053 (-) 1563 WP_136019404.1 signal recognition particle protein -
  ETT69_RS05185 (ETT69_05175) - 984068..984400 (-) 333 WP_003058340.1 putative DNA-binding protein -
  ETT69_RS05190 (ETT69_05180) - 984510..985208 (-) 699 WP_168389117.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41503.63 Da        Isoelectric Point: 9.5552

>NTDB_id=301191 ETT69_RS05170 WP_111713766.1 980137..981207(-) (xerS) [Streptococcus pyogenes strain emm55]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYMDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=301191 ETT69_RS05170 WP_111713766.1 980137..981207(-) (xerS) [Streptococcus pyogenes strain emm55]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATATGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATCTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(174-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.618

100

0.806