Detailed information    

insolico Bioinformatically predicted

Overview


Name   irvR   Type   Regulator
Locus tag   ETT70_RS08790 Genome accession   NZ_CP035429
Coordinates   1712601..1713368 (-) Length   255 a.a.
NCBI ID   WP_003058809.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emmNA     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1707601..1718368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT70_RS08775 (ETT70_08765) hexB 1708059..1710041 (-) 1983 WP_136076690.1 DNA mismatch repair endonuclease MutL Machinery gene
  ETT70_RS08780 (ETT70_08770) - 1710136..1711281 (-) 1146 WP_021299091.1 site-specific integrase -
  ETT70_RS08785 (ETT70_08775) - 1711609..1711752 (+) 144 WP_002992192.1 putative holin-like toxin -
  ETT70_RS08790 (ETT70_08780) irvR 1712601..1713368 (-) 768 WP_003058809.1 helix-turn-helix transcriptional regulator Regulator
  ETT70_RS08795 (ETT70_08785) - 1713522..1713728 (+) 207 WP_002992503.1 helix-turn-helix transcriptional regulator -
  ETT70_RS08800 (ETT70_08790) - 1713762..1713962 (+) 201 WP_002992502.1 helix-turn-helix domain-containing protein -
  ETT70_RS08805 (ETT70_08795) - 1713983..1714390 (+) 408 WP_002992501.1 hypothetical protein -
  ETT70_RS09435 - 1714403..1714525 (+) 123 WP_002992500.1 hypothetical protein -
  ETT70_RS08810 (ETT70_08800) - 1714806..1715327 (+) 522 WP_002992498.1 Rha family transcriptional regulator -
  ETT70_RS08815 (ETT70_08805) - 1715572..1715904 (+) 333 WP_002992497.1 hypothetical protein -
  ETT70_RS08820 (ETT70_08810) - 1715904..1716095 (+) 192 WP_080032246.1 hypothetical protein -
  ETT70_RS08825 (ETT70_08815) - 1716107..1716469 (+) 363 WP_136118488.1 hypothetical protein -
  ETT70_RS08830 (ETT70_08820) - 1716466..1716795 (+) 330 WP_000174505.1 hypothetical protein -
  ETT70_RS08835 (ETT70_08825) - 1716798..1717070 (+) 273 WP_001100459.1 hypothetical protein -
  ETT70_RS08840 (ETT70_08830) - 1717071..1717928 (+) 858 WP_002992489.1 primase alpha helix C-terminal domain-containing protein -

Sequence


Protein


Download         Length: 255 a.a.        Molecular weight: 28725.00 Da        Isoelectric Point: 4.3544

>NTDB_id=301137 ETT70_RS08790 WP_003058809.1 1712601..1713368(-) (irvR) [Streptococcus pyogenes strain emmNA]
MAKNSPQDLINREIFSTNLNMLMAKKNIKQIDIHNKLGIPKSTITGYVKGRSLPTAGNVQKLADFFGVLKSDIDPRFDSN
NIETNSNIIPSTLQKVTSTLSQLEHKRQLNVLDYAETQLEQQNTVEEPQATYYTYNYYDHAASAGTGQYLNDVQVETIEL
PVDYDADFVIPVYGDSMEPEYHSGDYVFIKLSINLSDGDIGVFEYYGDAYIKQLVINDSGAFLHSLNDKYDDILIDRDSD
FRIIGEVIGSFTSKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=301137 ETT70_RS08790 WP_003058809.1 1712601..1713368(-) (irvR) [Streptococcus pyogenes strain emmNA]
ATGGCTAAAAATAGTCCCCAAGATTTAATAAATAGAGAAATTTTCTCAACAAATCTCAACATGCTTATGGCTAAAAAGAA
TATCAAACAGATAGATATTCACAACAAACTAGGAATACCTAAGAGTACGATAACTGGCTATGTTAAAGGTCGTTCACTCC
CAACTGCTGGAAACGTTCAAAAGCTGGCGGACTTCTTCGGAGTTCTAAAATCAGACATTGACCCCCGTTTTGATTCTAAT
AATATTGAAACAAATAGTAATATTATCCCATCAACCCTACAAAAAGTAACATCTACTTTATCTCAGCTAGAACACAAGCG
ACAATTAAACGTCCTTGATTATGCTGAAACACAATTAGAACAACAAAACACAGTAGAAGAACCACAAGCCACCTACTACA
CTTACAATTACTACGACCACGCAGCTTCAGCTGGTACAGGTCAGTATCTAAATGATGTACAAGTAGAAACAATTGAATTA
CCAGTCGATTACGACGCTGATTTTGTCATACCGGTTTATGGCGATTCTATGGAACCCGAATACCATTCTGGGGACTATGT
ATTTATCAAACTATCTATTAACCTGTCAGATGGTGATATAGGAGTTTTTGAGTATTACGGTGATGCTTATATCAAACAAC
TTGTTATAAACGATTCTGGAGCATTTCTGCATAGTCTGAACGACAAGTATGACGATATACTCATAGATAGAGATAGTGAT
TTCCGTATTATCGGAGAAGTTATTGGGAGTTTTACATCTAAATCATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

34

100

0.4


Multiple sequence alignment