Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DRH02_RS13310 Genome accession   NZ_CP030716
Coordinates   3161780..3163159 (-) Length   459 a.a.
NCBI ID   WP_112904732.1    Uniprot ID   -
Organism   Salinibacter ruber strain P13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3156780..3168159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRH02_RS13285 - 3157149..3157547 (+) 399 WP_011405207.1 RidA family protein -
  DRH02_RS13290 - 3157564..3158118 (-) 555 WP_112904728.1 hypothetical protein -
  DRH02_RS13295 - 3158203..3159489 (-) 1287 WP_011405209.1 N-acetylmuramoyl-L-alanine amidase -
  DRH02_RS15800 - 3159639..3160382 (-) 744 WP_239498219.1 hypothetical protein -
  DRH02_RS15805 - 3160433..3160984 (-) 552 WP_239498220.1 hypothetical protein -
  DRH02_RS13305 - 3161033..3161638 (-) 606 WP_013062684.1 sigma-70 family RNA polymerase sigma factor -
  DRH02_RS13310 radA 3161780..3163159 (-) 1380 WP_112904732.1 DNA repair protein RadA Machinery gene
  DRH02_RS13315 - 3163396..3164148 (+) 753 WP_112904734.1 ABC transporter permease -
  DRH02_RS13320 - 3164215..3164985 (+) 771 WP_013062686.1 ABC transporter ATP-binding protein -
  DRH02_RS13325 - 3165043..3165975 (+) 933 WP_013062687.1 MlaD family protein -
  DRH02_RS13330 - 3166024..3167235 (+) 1212 WP_112904736.1 DUF445 family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49342.77 Da        Isoelectric Point: 4.5825

>NTDB_id=301130 DRH02_RS13310 WP_112904732.1 3161780..3163159(-) (radA) [Salinibacter ruber strain P13]
MASSEPRYVCQECGHEAHKWMGKCTGCGAWNTLVKETESADVEAQVPDLSTDGQNGTAAAQNQPTQLTDVEMEGESRLKT
GVDELDRVMGGGIMQGSFSLIAGDPGIGKSTLMTELGGYLPSRKILYVTGEESKRQVKLRAQRLGVDSDALYLLAETNVQ
EIANAVDDVAPDLLVADSIQTIYRPDLTSAPGSVSQVRESTASLLKLTKEREFSTFLVGHVTKKGTIAGPRVLEHMVDTV
LYFEGDQNHAYRILRSVKNRFGAANEIGVFEMREDGLREVPNPSEIFLSERGYGVSGSTVVCSLEGTRPILVEIQALVTP
TSYSTPQRTVTGFAAQRLQMILAVLEKRAGLAFSDHDVFINVAGGVKLEEPAVDLGVAIAAASSFRDIPADTGSALIGEV
GLGGEIRTVSRVEPRLKEAAKLGFDRAVVPENNLDRIAGDYDIDVTGAQQLKEVVDVVL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=301130 DRH02_RS13310 WP_112904732.1 3161780..3163159(-) (radA) [Salinibacter ruber strain P13]
ATGGCCAGCTCCGAGCCGCGATACGTTTGTCAGGAATGTGGGCACGAGGCCCACAAGTGGATGGGCAAGTGCACCGGGTG
CGGGGCCTGGAATACGCTCGTGAAGGAGACCGAGAGTGCCGACGTGGAGGCCCAGGTCCCCGACCTCAGCACGGACGGCC
AGAACGGAACGGCGGCGGCCCAAAACCAACCGACCCAGCTGACGGACGTGGAGATGGAGGGGGAGTCTCGGCTGAAGACC
GGGGTCGACGAGCTTGACCGCGTCATGGGCGGGGGCATCATGCAGGGCTCGTTCAGCCTCATCGCCGGGGACCCCGGCAT
CGGCAAGAGCACGCTCATGACCGAGCTGGGCGGCTACCTGCCGAGCCGCAAGATCCTGTACGTGACCGGGGAGGAGTCGA
AACGGCAGGTCAAGCTACGCGCCCAGCGGCTCGGGGTCGACAGCGACGCCCTCTACCTGCTGGCCGAGACAAACGTGCAG
GAGATCGCCAACGCCGTCGACGACGTGGCCCCCGACCTGCTCGTGGCCGACTCCATTCAGACCATCTACCGGCCCGACCT
GACGAGCGCCCCCGGTTCGGTCAGTCAGGTGCGGGAGAGCACCGCCTCGCTCCTCAAGCTTACGAAGGAGCGGGAGTTCT
CCACCTTCCTCGTGGGGCACGTTACCAAGAAGGGCACCATCGCGGGGCCCCGGGTGCTGGAGCATATGGTGGACACGGTG
TTGTACTTTGAGGGCGATCAGAACCACGCGTACCGCATCCTCCGGAGTGTGAAAAACCGGTTCGGAGCGGCCAACGAGAT
TGGGGTGTTCGAGATGCGGGAGGACGGCCTGCGGGAGGTGCCCAACCCGAGTGAGATCTTCCTGTCCGAGCGCGGCTATG
GCGTGAGCGGCTCCACGGTCGTGTGCTCCCTGGAGGGCACCCGGCCCATCCTGGTCGAGATTCAGGCGCTCGTCACGCCC
ACCTCCTACAGCACCCCCCAGCGCACCGTCACCGGCTTCGCGGCCCAGCGGCTGCAGATGATACTGGCGGTGTTGGAGAA
GCGCGCCGGACTGGCCTTCAGCGACCATGACGTGTTCATCAACGTGGCCGGGGGGGTCAAACTGGAGGAGCCGGCCGTGG
ACCTGGGCGTCGCCATCGCGGCGGCGTCGTCGTTCCGCGACATTCCCGCCGACACCGGCTCGGCCCTCATCGGCGAGGTG
GGGCTCGGCGGCGAGATTCGCACCGTGAGCCGCGTGGAGCCGCGCCTCAAGGAGGCCGCCAAGCTGGGCTTCGACCGGGC
GGTGGTGCCGGAGAACAACCTCGACCGCATTGCGGGCGACTACGACATCGACGTGACTGGGGCCCAGCAACTGAAGGAGG
TCGTGGACGTGGTGTTGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

Subunit ChlI of Mg-chelatase (ChlI)

(344-433)

KaiC (ATPase)

(79-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.495

100

0.527
  radA Streptococcus mitis SK321

50.542

100

0.508
  radA Streptococcus pneumoniae Rx1

50.542

100

0.508
  radA Streptococcus pneumoniae TIGR4

50.542

100

0.508
  radA Streptococcus pneumoniae D39

50.542

100

0.508
  radA Streptococcus pneumoniae R6

50.542

100

0.508
  radA Streptococcus mitis NCTC 12261

50.217

100

0.503

Multiple sequence alignment