Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DNH96_RS09175 Genome accession   NZ_CP030715
Coordinates   1912679..1914049 (+) Length   456 a.a.
NCBI ID   WP_014614769.1    Uniprot ID   A0A166QVY3
Organism   Staphylococcus pseudintermedius strain VB88     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1907679..1919049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNH96_RS09150 (DNH96_09150) - 1907817..1909037 (+) 1221 WP_063278651.1 YcaO-like family protein -
  DNH96_RS09155 (DNH96_09155) - 1909057..1909869 (+) 813 WP_096533101.1 SagB family peptide dehydrogenase -
  DNH96_RS09160 (DNH96_09160) - 1909869..1910828 (+) 960 WP_233510719.1 hypothetical protein -
  DNH96_RS09165 (DNH96_09165) - 1910843..1911547 (+) 705 WP_014614771.1 ABC transporter ATP-binding protein -
  DNH96_RS09170 (DNH96_09170) - 1911534..1912280 (+) 747 WP_014614770.1 ABC transporter permease -
  DNH96_RS09175 (DNH96_09175) radA 1912679..1914049 (+) 1371 WP_014614769.1 DNA repair protein RadA Machinery gene
  DNH96_RS09180 (DNH96_09180) - 1914068..1915129 (+) 1062 WP_014614768.1 PIN/TRAM domain-containing protein -
  DNH96_RS09185 (DNH96_09185) ispD 1915130..1915828 (+) 699 WP_096533102.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  DNH96_RS09190 (DNH96_09190) ispF 1915821..1916300 (+) 480 WP_096533103.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  DNH96_RS09195 (DNH96_09195) gltX 1916377..1917831 (+) 1455 WP_037543943.1 glutamate--tRNA ligase -
  DNH96_RS09200 (DNH96_09200) cysE 1918219..1918884 (+) 666 WP_172425792.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49994.48 Da        Isoelectric Point: 7.0051

>NTDB_id=301118 DNH96_RS09175 WP_014614769.1 1912679..1914049(+) (radA) [Staphylococcus pseudintermedius strain VB88]
MAKTKTIFECTACGYQSPKWMGKCPNCGAWNSMEESFEQKTASPKHGVRAQKTSSAKIQKLDDIKQELAPRIQTNSGELN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEA
VKKVEPDLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVLNPSEMFLEERTTNVAGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIVIATASSFKDQAVDGLDCYIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKNNIGGWHFPEGIEVIGVTSVNEALKYALKN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=301118 DNH96_RS09175 WP_014614769.1 1912679..1914049(+) (radA) [Staphylococcus pseudintermedius strain VB88]
GTGGCAAAAACAAAAACAATTTTTGAATGTACGGCCTGTGGTTATCAATCGCCTAAATGGATGGGGAAATGTCCAAATTG
TGGTGCTTGGAATTCAATGGAGGAATCTTTTGAACAAAAAACTGCGAGTCCTAAACACGGTGTACGGGCGCAAAAAACAA
GTTCAGCAAAAATACAAAAGCTCGATGACATTAAACAAGAGCTTGCGCCACGTATCCAAACGAATAGTGGTGAATTAAAC
CGTGTGCTCGGTGGCGGTATTGTAGAAGGGTCACTCGTGCTGATTGGTGGCGATCCAGGAATAGGGAAGTCCACATTGTT
ACTTCAAATGTGCGCGGCTTTATCTAAAGAGAAAAGGGTGCTCTATATTACTGGTGAGGAATCACTCAATCAAACTAAAA
TTAGAGCGGATCGTTTGGATGAAGATGCGAGTCAACTTAACGTGTTTGCGGAAACGGACTTAATGGTTATTCATGAAGCG
GTGAAAAAGGTCGAACCTGATTTAATTGTAGTGGACTCTATTCAGACGATCTACCATCCCGAAATCAGTTCGGCGCCTGG
CTCTGTATCTCAAGTTCGTGAAAGTACACAAAGCTTGATGCACATCGCAAAACAAATGAATGTTGCGACGTTTATTGTAG
GCCATGTGACGAAAGAAGGCCAAATCGCGGGGCCGCGTTTACTTGAACATATGGTGGATACGGTGCTTTATTTTGAAGGT
GATGAACATCATGCGTATCGTATTTTAAGAGCGGTGAAAAACCGTTTTGGCTCTACGAATGAAATGGGTATTTTTGAAAT
GAAACAGTCAGGTTTAAAAAGCGTGCTTAACCCGTCAGAAATGTTTTTAGAAGAACGGACGACCAATGTTGCAGGTTCGA
CAATTGTCGCAACGATGGAAGGGACACGACCATTGTTAATTGAAGTACAAGCGCTTGTCACACCGACGACGTTCAATAAT
CCGAGACGTATGGCGACAGGTATTGACCATAATCGCCTCAGTTTGTTAATGGCGGTGTTAGAGAAAAAAGAAGGTTATTT
ATTACAACAACAAGACGCTTACATTAAGGTGGCTGGGGGCGTCAAACTCTCTGAACCTGCTGTCGACTTAGGTATCGTCA
TTGCGACAGCTTCTAGTTTTAAAGACCAAGCAGTAGACGGCCTCGATTGTTATATTGGCGAGGTTGGATTGACTGGTGAG
GTCCGCCGTGTTTCGCGCATTGAGCAACGTGTGCAAGAAGCAGCAAAATTGGGCTTTAAACGTGTGATTATCCCTAAAAA
CAATATTGGCGGATGGCACTTCCCAGAAGGTATTGAAGTGATTGGCGTGACTTCTGTCAATGAAGCATTGAAATACGCAT
TAAAAAATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166QVY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

100

0.658
  radA Streptococcus pneumoniae Rx1

58.628

99.123

0.581
  radA Streptococcus pneumoniae D39

58.628

99.123

0.581
  radA Streptococcus pneumoniae R6

58.628

99.123

0.581
  radA Streptococcus pneumoniae TIGR4

58.628

99.123

0.581
  radA Streptococcus mitis NCTC 12261

58.628

99.123

0.581
  radA Streptococcus mitis SK321

58.628

99.123

0.581

Multiple sequence alignment