Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ETT70_RS04870 Genome accession   NZ_CP035429
Coordinates   921500..922570 (-) Length   356 a.a.
NCBI ID   WP_038432344.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emmNA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 916500..927570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT70_RS04850 (ETT70_04840) citX 917080..917658 (+) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -
  ETT70_RS04855 (ETT70_04845) - 917673..919067 (+) 1395 WP_168693995.1 oxaloacetate decarboxylase subunit alpha -
  ETT70_RS04860 (ETT70_04850) citC 919178..920230 (-) 1053 WP_030126672.1 [citrate (pro-3S)-lyase] ligase -
  ETT70_RS04865 (ETT70_04855) - 920319..920801 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  ETT70_RS04870 (ETT70_04860) xerS 921500..922570 (-) 1071 WP_038432344.1 tyrosine recombinase XerS Machinery gene
  ETT70_RS04875 (ETT70_04865) - 923040..923738 (+) 699 WP_136112560.1 helix-turn-helix transcriptional regulator -
  ETT70_RS04880 (ETT70_04870) ffh 923873..925435 (-) 1563 WP_002993302.1 signal recognition particle protein -
  ETT70_RS04885 (ETT70_04875) - 925450..925782 (-) 333 WP_002989745.1 putative DNA-binding protein -
  ETT70_RS04890 (ETT70_04880) - 925880..926578 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41499.62 Da        Isoelectric Point: 9.5552

>NTDB_id=301093 ETT70_RS04870 WP_038432344.1 921500..922570(-) (xerS) [Streptococcus pyogenes strain emmNA]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQVPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=301093 ETT70_RS04870 WP_038432344.1 921500..922570(-) (xerS) [Streptococcus pyogenes strain emmNA]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTATCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGTGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803