Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DRH00_RS13760 Genome accession   NZ_CP030369
Coordinates   3292345..3293724 (-) Length   459 a.a.
NCBI ID   WP_011405212.1    Uniprot ID   A0A9X2Q849
Organism   Salinibacter ruber strain RM158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3287345..3298724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRH00_RS13740 - 3288401..3289144 (-) 744 WP_240331209.1 hypothetical protein -
  DRH00_RS17515 - 3289195..3289449 (-) 255 WP_240331210.1 hypothetical protein -
  DRH00_RS13745 - 3289446..3290042 (-) 597 WP_240331211.1 hypothetical protein -
  DRH00_RS17520 - 3290192..3290935 (-) 744 WP_240331209.1 hypothetical protein -
  DRH00_RS17525 - 3290986..3291549 (-) 564 WP_240331212.1 hypothetical protein -
  DRH00_RS13755 - 3291598..3292203 (-) 606 WP_013062684.1 sigma-70 family RNA polymerase sigma factor -
  DRH00_RS13760 radA 3292345..3293724 (-) 1380 WP_011405212.1 DNA repair protein RadA Machinery gene
  DRH00_RS13765 - 3293961..3294713 (+) 753 WP_118827341.1 ABC transporter permease -
  DRH00_RS13770 - 3294780..3295550 (+) 771 WP_013062686.1 ABC transporter ATP-binding protein -
  DRH00_RS13775 - 3295608..3296540 (+) 933 WP_013062687.1 MlaD family protein -
  DRH00_RS13780 - 3296589..3297797 (+) 1209 WP_118827342.1 DUF445 family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49326.77 Da        Isoelectric Point: 4.5854

>NTDB_id=301060 DRH00_RS13760 WP_011405212.1 3292345..3293724(-) (radA) [Salinibacter ruber strain RM158]
MASSEPRYVCQECGHEAHKWMGKCTGCGAWNTLVKETESADVEAQVPDLSTDGQNGTAAAQNQPTQLTEVEMEGESRLKT
GVDELDRVMGGGIMQGSFSLIAGDPGIGKSTLMTELGGYLPGRKILYVTGEESKRQVKLRAQRLGVDSDALYLLAETNVQ
EIANAVDDVAPDLLVADSIQTIYRPDLTSAPGSVSQVRESTASLLKLTKEREFSTFLVGHVTKKGTIAGPRVLEHMVDTV
LYFEGDQNHAYRILRSVKNRFGAANEIGVFEMREDGLREVPNPSEIFLSERGYGVSGSTVVCSLEGTRPILVEIQALVTP
TSYSTPQRTVTGFAAQRLQMILAVLEKRAGLAFSDHDVFINVAGGVKLEEPAVDLGVAIAAASSFRDIPADTGSALIGEV
GLGGEIRTVSRVEPRLKEAAKLGFDRAVVPENNLDRIAGDYDIDVTGAQQLKEVVDVVL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=301060 DRH00_RS13760 WP_011405212.1 3292345..3293724(-) (radA) [Salinibacter ruber strain RM158]
ATGGCCAGCTCCGAGCCGCGATACGTTTGTCAGGAATGTGGGCACGAGGCCCACAAGTGGATGGGCAAGTGCACCGGGTG
CGGGGCCTGGAACACGCTCGTGAAGGAGACCGAGAGTGCCGACGTGGAGGCCCAGGTCCCCGACCTCAGCACGGACGGCC
AGAACGGAACGGCGGCGGCCCAAAACCAGCCGACCCAGCTGACGGAGGTGGAGATGGAGGGGGAGTCTCGGCTGAAGACC
GGGGTCGACGAGCTCGACCGCGTCATGGGCGGGGGCATCATGCAGGGCTCGTTCAGCCTCATCGCCGGGGACCCCGGCAT
CGGCAAGAGCACGCTCATGACCGAGCTGGGCGGCTACCTGCCGGGCCGCAAGATCCTGTACGTGACCGGGGAGGAGTCGA
AGCGACAGGTCAAGCTGCGCGCCCAGCGGCTCGGGGTCGACAGCGACGCCCTCTACCTGCTGGCCGAGACAAACGTGCAG
GAGATCGCCAACGCCGTCGACGACGTGGCCCCCGACCTGCTCGTGGCCGACTCCATTCAGACCATCTACCGGCCCGACCT
GACGAGCGCCCCCGGTTCGGTCAGTCAGGTGCGGGAGAGCACCGCCTCGCTCCTCAAGCTCACGAAGGAGCGGGAGTTCT
CCACCTTCCTCGTGGGGCACGTTACCAAGAAGGGCACCATCGCGGGGCCCCGGGTGCTGGAGCATATGGTGGACACGGTG
TTGTACTTTGAGGGCGATCAGAACCACGCGTACCGCATCCTCCGGAGTGTGAAAAACCGGTTCGGGGCGGCCAACGAGAT
TGGGGTGTTCGAGATGCGGGAGGACGGCCTGCGGGAGGTGCCCAACCCGAGTGAGATCTTCCTGTCCGAGCGCGGCTATG
GCGTGAGCGGCTCCACGGTCGTGTGCTCCCTGGAGGGCACCCGGCCCATCCTGGTCGAGATTCAGGCGCTCGTCACGCCC
ACCTCCTACAGCACCCCCCAGCGCACCGTCACCGGCTTCGCGGCCCAGCGGCTGCAGATGATTCTGGCGGTGTTGGAGAA
GCGCGCCGGACTGGCCTTCAGCGACCATGACGTGTTTATCAACGTGGCCGGGGGGGTCAAACTGGAGGAGCCGGCCGTGG
ACCTGGGCGTCGCCATCGCGGCGGCGTCGTCGTTCCGCGACATTCCCGCCGACACCGGCTCGGCCCTCATCGGCGAGGTG
GGGCTCGGCGGCGAGATTCGCACCGTGAGCCGCGTGGAGCCGCGCCTCAAGGAGGCCGCCAAGCTGGGCTTCGACCGGGC
GGTGGTGCCGGAGAACAACCTCGACCGCATTGCGGGTGACTACGACATCGACGTGACCGGGGCCCAGCAACTGAAGGAGG
TCGTGGACGTGGTGTTGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

KaiC (ATPase)

(79-151)

Subunit ChlI of Mg-chelatase (ChlI)

(344-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.495

100

0.527
  radA Streptococcus mitis NCTC 12261

50.435

100

0.505
  radA Streptococcus mitis SK321

50.435

100

0.505
  radA Streptococcus pneumoniae Rx1

50.435

100

0.505
  radA Streptococcus pneumoniae D39

50.435

100

0.505
  radA Streptococcus pneumoniae R6

50.435

100

0.505
  radA Streptococcus pneumoniae TIGR4

50.435

100

0.505

Multiple sequence alignment