Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DRG99_RS12915 Genome accession   NZ_CP030364
Coordinates   3089751..3091130 (-) Length   459 a.a.
NCBI ID   WP_043553458.1    Uniprot ID   A0A9X2R6M0
Organism   Salinibacter ruber strain M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3084751..3096130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRG99_RS12890 - 3085125..3085523 (+) 399 WP_011405207.1 RidA family protein -
  DRG99_RS12895 - 3085540..3086031 (-) 492 WP_240333498.1 hypothetical protein -
  DRG99_RS12900 - 3086229..3087515 (-) 1287 WP_013062682.1 N-acetylmuramoyl-L-alanine amidase -
  DRG99_RS16245 - 3087665..3088408 (-) 744 WP_240331648.1 hypothetical protein -
  DRG99_RS16250 - 3088545..3088955 (-) 411 WP_240333499.1 hypothetical protein -
  DRG99_RS12910 - 3089004..3089609 (-) 606 WP_013062684.1 sigma-70 family RNA polymerase sigma factor -
  DRG99_RS12915 radA 3089751..3091130 (-) 1380 WP_043553458.1 DNA repair protein RadA Machinery gene
  DRG99_RS12920 - 3091367..3092119 (+) 753 WP_011405213.1 ABC transporter permease -
  DRG99_RS12925 - 3092186..3092956 (+) 771 WP_013062686.1 ABC transporter ATP-binding protein -
  DRG99_RS12930 - 3093014..3093946 (+) 933 WP_013062687.1 MlaD family protein -
  DRG99_RS12935 - 3093995..3095188 (+) 1194 WP_013062688.1 DUF445 family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49312.74 Da        Isoelectric Point: 4.5825

>NTDB_id=301053 DRG99_RS12915 WP_043553458.1 3089751..3091130(-) (radA) [Salinibacter ruber strain M1]
MASSEPRYVCQECGHEAHKWMGKCTGCGAWNTLVKETESADVEAQVPDLSTDGQNGTAAAQNQPTQLTDVEMEGESRLKT
GVDELDRVMGGGIMQGSFSLIAGDPGIGKSTLMTELGGYLPGRKILYVTGEESKRQVKLRAQRLGVDSDALYLLAETNVQ
EIANAVDDVAPDLLVADSIQTIYRPDLTSAPGSVSQVRESTASLLKLTKEREFSTFLVGHVTKKGTIAGPRVLEHMVDTV
LYFEGDQNHAYRILRSVKNRFGAANEIGVFEMREDGLREVPNPSEIFLSERGYGVSGSTVVCSLEGTRPILVEIQALVTP
TSYSTPQRTVTGFAAQRLQMILAVLEKRAGLAFSDHDVFINVAGGVKLEEPAVDLGVAIAAASSFRDIPADTGSALIGEV
GLGGEIRTVSRVEPRLKEAAKLGFDRAVVPENNLDRIAGDYDIDVTGAQQLKEVVDVVL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=301053 DRG99_RS12915 WP_043553458.1 3089751..3091130(-) (radA) [Salinibacter ruber strain M1]
ATGGCCAGCTCCGAGCCGCGATACGTTTGTCAGGAATGTGGGCACGAGGCCCACAAGTGGATGGGCAAGTGCACCGGGTG
CGGGGCCTGGAACACGCTCGTGAAGGAGACCGAGAGTGCCGACGTGGAGGCCCAGGTCCCCGACCTCAGCACGGACGGCC
AGAACGGAACGGCGGCGGCCCAAAACCAGCCGACCCAGCTGACGGACGTGGAGATGGAGGGGGAGTCTCGGCTGAAGACC
GGGGTCGACGAGCTCGACCGCGTCATGGGCGGGGGCATCATGCAGGGCTCGTTCAGCCTCATCGCCGGGGACCCCGGCAT
CGGCAAGAGCACGCTCATGACCGAGCTGGGCGGCTACCTGCCGGGCCGCAAGATCCTGTACGTGACCGGGGAGGAGTCGA
AGCGACAGGTCAAGCTGCGCGCCCAGCGGCTCGGGGTCGACAGCGACGCCCTCTACCTGCTGGCCGAGACAAACGTGCAG
GAGATCGCCAACGCCGTCGACGACGTGGCCCCCGACCTGCTCGTGGCCGACTCCATTCAGACCATCTACCGGCCCGACCT
GACGAGCGCCCCCGGTTCGGTCAGTCAGGTGCGGGAGAGCACCGCCTCGCTCCTCAAGCTCACGAAGGAGCGGGAGTTCT
CCACCTTCCTCGTGGGGCACGTTACCAAGAAGGGCACCATTGCGGGGCCCCGGGTGCTGGAGCATATGGTGGACACGGTG
TTGTACTTTGAGGGCGATCAGAACCACGCGTACCGCATCCTCCGGAGTGTGAAAAACCGGTTCGGAGCGGCCAACGAGAT
TGGGGTGTTCGAGATGCGGGAGGACGGCCTGCGGGAGGTGCCCAACCCGAGTGAGATCTTCCTGTCCGAGCGCGGCTACG
GCGTGAGCGGCTCCACGGTCGTGTGCTCCCTGGAGGGCACCCGGCCCATCCTGGTCGAGATTCAGGCGCTCGTCACGCCC
ACCTCCTACAGCACCCCCCAGCGCACCGTCACCGGCTTCGCGGCCCAGCGGCTGCAGATGATTCTGGCGGTGTTGGAGAA
GCGCGCCGGACTGGCCTTCAGCGACCATGACGTGTTCATCAACGTGGCTGGGGGGGTCAAACTGGAGGAGCCGGCCGTGG
ACCTGGGCGTCGCCATCGCGGCGGCGTCGTCGTTCCGCGACATTCCCGCCGACACCGGCTCGGCCCTCATCGGCGAGGTG
GGGCTCGGCGGCGAGATTCGCACCGTGAGCCGCGTGGAGCCGCGCCTCAAGGAGGCCGCCAAGCTGGGCTTCGACCGGGC
GGTGGTGCCGGAGAACAACCTCGACCGCATTGCGGGCGACTACGACATCGACGTGACCGGGGCCCAGCAACTGAAGGAGG
TCGTGGACGTGGTGTTGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

Subunit ChlI of Mg-chelatase (ChlI)

(344-433)

KaiC (ATPase)

(79-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.495

100

0.527
  radA Streptococcus mitis NCTC 12261

50.217

100

0.503
  radA Streptococcus mitis SK321

50.217

100

0.503
  radA Streptococcus pneumoniae Rx1

50.217

100

0.503
  radA Streptococcus pneumoniae D39

50.217

100

0.503
  radA Streptococcus pneumoniae R6

50.217

100

0.503
  radA Streptococcus pneumoniae TIGR4

50.217

100

0.503

Multiple sequence alignment