Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DRG77_RS13635 Genome accession   NZ_CP030356
Coordinates   3320078..3321457 (-) Length   459 a.a.
NCBI ID   WP_043553458.1    Uniprot ID   A0A9X2R6M0
Organism   Salinibacter ruber strain P18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3315078..3326457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRG77_RS13610 - 3315456..3315854 (+) 399 WP_011405207.1 RidA family protein -
  DRG77_RS13615 - 3315871..3316425 (-) 555 WP_118839835.1 hypothetical protein -
  DRG77_RS13620 - 3316510..3317787 (-) 1278 WP_118839836.1 N-acetylmuramoyl-L-alanine amidase -
  DRG77_RS16025 - 3317937..3318680 (-) 744 WP_231847175.1 hypothetical protein -
  DRG77_RS16030 - 3318731..3319282 (-) 552 WP_240328238.1 hypothetical protein -
  DRG77_RS13630 - 3319331..3319936 (-) 606 WP_013062684.1 sigma-70 family RNA polymerase sigma factor -
  DRG77_RS13635 radA 3320078..3321457 (-) 1380 WP_043553458.1 DNA repair protein RadA Machinery gene
  DRG77_RS13640 - 3321694..3322446 (+) 753 WP_112904734.1 ABC transporter permease -
  DRG77_RS13645 - 3322513..3323283 (+) 771 WP_013062686.1 ABC transporter ATP-binding protein -
  DRG77_RS13650 - 3323341..3324273 (+) 933 WP_118840178.1 MlaD family protein -
  DRG77_RS13655 - 3324322..3325533 (+) 1212 WP_118839838.1 DUF445 family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49312.74 Da        Isoelectric Point: 4.5825

>NTDB_id=301032 DRG77_RS13635 WP_043553458.1 3320078..3321457(-) (radA) [Salinibacter ruber strain P18]
MASSEPRYVCQECGHEAHKWMGKCTGCGAWNTLVKETESADVEAQVPDLSTDGQNGTAAAQNQPTQLTDVEMEGESRLKT
GVDELDRVMGGGIMQGSFSLIAGDPGIGKSTLMTELGGYLPGRKILYVTGEESKRQVKLRAQRLGVDSDALYLLAETNVQ
EIANAVDDVAPDLLVADSIQTIYRPDLTSAPGSVSQVRESTASLLKLTKEREFSTFLVGHVTKKGTIAGPRVLEHMVDTV
LYFEGDQNHAYRILRSVKNRFGAANEIGVFEMREDGLREVPNPSEIFLSERGYGVSGSTVVCSLEGTRPILVEIQALVTP
TSYSTPQRTVTGFAAQRLQMILAVLEKRAGLAFSDHDVFINVAGGVKLEEPAVDLGVAIAAASSFRDIPADTGSALIGEV
GLGGEIRTVSRVEPRLKEAAKLGFDRAVVPENNLDRIAGDYDIDVTGAQQLKEVVDVVL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=301032 DRG77_RS13635 WP_043553458.1 3320078..3321457(-) (radA) [Salinibacter ruber strain P18]
ATGGCCAGCTCCGAGCCGCGATACGTTTGTCAGGAATGTGGGCACGAGGCCCACAAGTGGATGGGCAAGTGCACCGGGTG
CGGGGCCTGGAACACGCTCGTGAAGGAGACCGAGAGTGCCGACGTGGAGGCCCAGGTCCCCGACCTCAGCACGGACGGCC
AGAACGGAACGGCGGCGGCCCAAAACCAGCCGACCCAGCTGACGGACGTGGAGATGGAGGGGGAGTCTCGGCTGAAGACC
GGGGTCGACGAGCTTGACCGCGTCATGGGCGGGGGCATCATGCAGGGCTCGTTCAGCCTCATCGCCGGGGACCCCGGCAT
CGGCAAGAGCACGCTCATGACCGAGCTGGGCGGCTACCTGCCGGGCCGCAAGATCCTGTACGTGACCGGGGAGGAGTCGA
AGCGACAGGTCAAGCTGCGCGCCCAGCGGCTCGGGGTCGACAGCGACGCCCTCTACCTGCTGGCCGAGACAAACGTGCAG
GAGATCGCCAACGCCGTCGACGACGTGGCCCCCGACCTGCTCGTGGCCGACTCCATTCAGACCATCTACCGGCCCGACCT
GACGAGCGCCCCCGGTTCGGTCAGTCAGGTGCGGGAGAGCACCGCCTCGCTCCTCAAGCTCACGAAGGAGCGGGAGTTCT
CCACCTTCCTCGTGGGGCACGTTACCAAGAAGGGCACCATCGCGGGGCCCCGGGTGCTGGAGCATATGGTGGACACGGTG
TTGTACTTTGAGGGCGATCAGAACCACGCGTACCGCATCCTCCGGAGTGTGAAAAACCGGTTCGGGGCGGCCAACGAGAT
TGGGGTGTTCGAGATGCGGGAGGACGGCCTGCGGGAGGTGCCCAACCCGAGTGAGATCTTCCTGTCCGAGCGCGGCTATG
GCGTGAGCGGCTCCACGGTCGTGTGCTCCCTGGAGGGCACCCGGCCCATCCTGGTCGAGATTCAGGCGCTCGTCACGCCC
ACCTCCTACAGCACCCCCCAGCGCACCGTCACCGGCTTCGCGGCCCAGCGGCTGCAGATGATTCTGGCGGTGTTGGAGAA
GCGCGCCGGACTGGCCTTCAGCGACCATGACGTGTTCATCAACGTGGCCGGCGGGGTTAAACTGGAGGAGCCGGCCGTGG
ACCTGGGCGTCGCCATCGCGGCGGCGTCGTCGTTCCGCGACATTCCCGCCGACACCGGCTCGGCCCTCATCGGCGAGGTG
GGGCTCGGCGGCGAGATTCGCACCGTGAGCCGCGTGGAGCCGCGCCTCAAGGAGGCCGCCAAGCTGGGCTTCGACCGGGC
GGTGGTGCCGGAGAACAACCTCGACCGCATTGCGGGCGACTACGACATCGACGTGACCGGGGCCCAGCAACTGAAGGAGG
TCGTGGACGTGGTGTTGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

Subunit ChlI of Mg-chelatase (ChlI)

(344-433)

KaiC (ATPase)

(79-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.495

100

0.527
  radA Streptococcus mitis NCTC 12261

50.217

100

0.503
  radA Streptococcus mitis SK321

50.217

100

0.503
  radA Streptococcus pneumoniae Rx1

50.217

100

0.503
  radA Streptococcus pneumoniae D39

50.217

100

0.503
  radA Streptococcus pneumoniae R6

50.217

100

0.503
  radA Streptococcus pneumoniae TIGR4

50.217

100

0.503

Multiple sequence alignment