Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   CSC46_RS23775 Genome accession   NZ_CP030351
Coordinates   5036617..5037174 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AR_460     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5031617..5042174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC46_RS23760 (CSC46_4812) pilY1 5031709..5035200 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  CSC46_RS23765 (CSC46_4813) pilX 5035212..5035799 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  CSC46_RS23770 (CSC46_4814) pilW 5035796..5036620 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  CSC46_RS23775 (CSC46_4815) pilV 5036617..5037174 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  CSC46_RS23780 (CSC46_4816) - 5037165..5037671 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  CSC46_RS23785 - 5037777..5038286 (-) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  CSC46_RS23790 (CSC46_4817) thiO 5038421..5039515 (+) 1095 WP_023084775.1 glycine oxidase ThiO -
  CSC46_RS23795 (CSC46_4818) pilR 5039561..5040897 (-) 1337 Protein_4597 two-component system response regulator PilR -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=301010 CSC46_RS23775 WP_003119423.1 5036617..5037174(-) (pilV) [Pseudomonas aeruginosa strain AR_460]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=301010 CSC46_RS23775 WP_003119423.1 5036617..5037174(-) (pilV) [Pseudomonas aeruginosa strain AR_460]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995

Multiple sequence alignment