Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   ETL60_RS21725 Genome accession   NZ_CP035414
Coordinates   1276947..1277306 (-) Length   119 a.a.
NCBI ID   WP_214284255.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103637     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1271947..1282306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL60_RS06705 (ETL60_06705) - 1272182..1272409 (-) 228 WP_041351654.1 helix-turn-helix domain-containing protein -
  ETL60_RS06710 (ETL60_06710) - 1272591..1272905 (+) 315 WP_041351652.1 hypothetical protein -
  ETL60_RS06715 (ETL60_06715) - 1272920..1273312 (+) 393 WP_041351650.1 hypothetical protein -
  ETL60_RS21575 - 1274072..1274389 (-) 318 WP_157671730.1 hypothetical protein -
  ETL60_RS21580 - 1274393..1274557 (-) 165 WP_157669816.1 hypothetical protein -
  ETL60_RS06720 (ETL60_06720) - 1274949..1275452 (+) 504 WP_046160291.1 hypothetical protein -
  ETL60_RS06725 (ETL60_06725) - 1275471..1275890 (+) 420 WP_046160292.1 hypothetical protein -
  ETL60_RS21720 (ETL60_06730) - 1276487..1276609 (-) 123 WP_224588918.1 response regulator aspartate phosphatase I -
  ETL60_RS21725 (ETL60_06735) rapF 1276947..1277306 (-) 360 WP_214284255.1 hypothetical protein Regulator
  ETL60_RS06740 (ETL60_06740) yjcS 1277413..1277730 (+) 318 WP_080480846.1 putative quinol monooxygenase -
  ETL60_RS06745 (ETL60_06745) - 1277845..1278162 (+) 318 WP_033881593.1 hypothetical protein -
  ETL60_RS06750 (ETL60_06750) manR 1278470..1280416 (+) 1947 WP_087614509.1 mannose transport/utilization transcriptional regulator ManR -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 14238.24 Da        Isoelectric Point: 4.9468

>NTDB_id=300758 ETL60_RS21725 WP_214284255.1 1276947..1277306(-) (rapF) [Bacillus subtilis strain SRCM103637]
MYLFRTRDLVIALTYYREAEKYLDLLDKNANTDKAEFYFKMSEVYYYMKETHFSMNYAQRAYSIFKEQKDAQGNLTYGKE
MVQCQFVIFGNLLDKMRYEDALETAEKALYDAIKIGDNI

Nucleotide


Download         Length: 360 bp        

>NTDB_id=300758 ETL60_RS21725 WP_214284255.1 1276947..1277306(-) (rapF) [Bacillus subtilis strain SRCM103637]
ATGTATCTTTTTAGAACGAGAGATTTAGTTATTGCTTTAACATATTATCGCGAAGCCGAAAAATATCTTGATTTATTAGA
TAAGAACGCAAATACAGATAAGGCAGAGTTCTATTTCAAAATGTCAGAAGTCTATTACTATATGAAAGAGACTCATTTTT
CAATGAATTATGCCCAGCGAGCATACTCTATATTTAAAGAACAAAAAGATGCTCAGGGGAACCTTACATATGGCAAGGAA
ATGGTCCAATGTCAGTTTGTTATCTTTGGGAACTTGCTAGATAAAATGCGTTATGAGGACGCTTTAGAAACAGCTGAAAA
AGCCTTATATGATGCTATAAAAATAGGGGACAACATTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

40.741

90.756

0.37
  rapC Bacillus subtilis subsp. subtilis str. 168

42.574

84.874

0.361

Multiple sequence alignment