Detailed information NTG0300709

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ETL60_RS13220
• Genome accession: NZ_CP035414
• Coordinates: 2449717..2450844 (-)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SRCM103637
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2444717..2455844

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ETL60_RS21945	-	2444763..2444975 (-)	213	Protein_2553	recombinase family protein	-
ETL60_RS13200 (ETL60_13200)	fumC	2445194..2446582 (-)	1389	WP_014480325.1	class II fumarate hydratase	-
ETL60_RS13205 (ETL60_13205)	-	2446749..2447639 (+)	891	WP_014480326.1	LysR family transcriptional regulator	-
ETL60_RS13210 (ETL60_13210)	-	2448582..2448977 (+)	396	WP_046160622.1	VOC family protein	-
ETL60_RS13220 (ETL60_13220)	rapC	2449717..2450844 (-)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
ETL60_RS22125 (ETL60_13225)	-	2451026..2452952 (+)	1927	Protein_2558	T7SS effector LXG polymorphic toxin	-
ETL60_RS13230 (ETL60_13230)	-	2452966..2453253 (+)	288	WP_014480331.1	hypothetical protein	-
ETL60_RS13240 (ETL60_13240)	-	2453656..2454096 (+)	441	WP_014480332.1	SMI1/KNR4 family protein	-
ETL60_RS13245 (ETL60_13245)	-	2454195..2454647 (+)	453	WP_014480333.1	SMI1/KNR4 family protein	-
ETL60_RS13250 (ETL60_13250)	cdiI	2454744..2455103 (+)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
ETL60_RS13255 (ETL60_13255)	-	2455208..2455687 (+)	480	WP_224588637.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=300709 ETL60_RS13220 WP_014480328.1 2449717..2450844(-) (rapC) [Bacillus subtilis strain SRCM103637]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=300709 ETL60_RS13220 WP_014480328.1 2449717..2450844(-) (rapC) [Bacillus subtilis strain SRCM103637]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397