Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ETL60_RS06980 Genome accession   NZ_CP035414
Coordinates   1323653..1324789 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103637     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1318653..1329789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL60_RS06960 (ETL60_06960) uxaA 1319109..1320602 (+) 1494 WP_014479540.1 altronate dehydratase family protein -
  ETL60_RS06965 (ETL60_06965) yjnA 1320641..1321405 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  ETL60_RS06970 (ETL60_06970) bstD 1321624..1322088 (-) 465 WP_014479541.1 DinB family protein -
  ETL60_RS06975 (ETL60_06975) yjoB 1322237..1323508 (+) 1272 WP_003245490.1 ATPase YjoB -
  ETL60_RS06980 (ETL60_06980) rapC 1323653..1324789 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  ETL60_RS06985 (ETL60_06985) phrA 1324779..1324913 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ETL60_RS06990 (ETL60_06990) yjpA 1324944..1325190 (-) 247 Protein_1312 YciI family protein -
  ETL60_RS06995 (ETL60_06995) xlyB 1325311..1326264 (+) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  ETL60_RS07000 (ETL60_07000) yjqA 1326304..1326681 (-) 378 WP_014479546.1 PH domain-containing protein -
  ETL60_RS07005 (ETL60_07005) pghB 1326786..1327388 (+) 603 WP_087614515.1 poly-gamma-glutamate hydrolase family protein -
  ETL60_RS07010 (ETL60_07010) xpdC 1327465..1328301 (+) 837 WP_003245071.1 manganese catalase family protein -
  ETL60_RS07015 (ETL60_07015) xkdA 1328345..1328941 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  ETL60_RS07020 (ETL60_07020) xre 1329104..1329445 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=300660 ETL60_RS06980 WP_015252291.1 1323653..1324789(+) (rapC) [Bacillus subtilis strain SRCM103637]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=300660 ETL60_RS06980 WP_015252291.1 1323653..1324789(+) (rapC) [Bacillus subtilis strain SRCM103637]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418