Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DRB00_RS17890 Genome accession   NZ_CP030292
Coordinates   3561448..3562044 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain 721005     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3556448..3567044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRB00_RS17875 (DRB00_18305) helD 3556656..3558710 (-) 2055 WP_002898429.1 DNA helicase IV -
  DRB00_RS17880 (DRB00_18310) - 3558835..3559281 (+) 447 WP_002898425.1 YccF domain-containing protein -
  DRB00_RS17885 (DRB00_18315) yccS 3559299..3561434 (+) 2136 WP_002898422.1 YccS family putative transporter -
  DRB00_RS17890 (DRB00_18320) sxy/tfoX 3561448..3562044 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  DRB00_RS17895 (DRB00_18330) ltrA 3562413..3563900 (-) 1488 WP_004178082.1 group II intron reverse transcriptase/maturase -
  DRB00_RS17900 (DRB00_18340) sulA 3564303..3564812 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  DRB00_RS17905 (DRB00_18345) ompA 3565165..3566235 (+) 1071 WP_062954987.1 porin OmpA -
  DRB00_RS17910 (DRB00_18350) matP 3566367..3566819 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=300599 DRB00_RS17890 WP_004150836.1 3561448..3562044(-) (sxy/tfoX) [Klebsiella pneumoniae strain 721005]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=300599 DRB00_RS17890 WP_004150836.1 3561448..3562044(-) (sxy/tfoX) [Klebsiella pneumoniae strain 721005]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment